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feat: jinja2 README templating — gen_readme.py renders from live codebase 
README.md.j2 is the source of truth. dev/scripts/gen_readme.py collects
live counts from compose.yml, pyproject.toml, pipeline registry, pytest,
and auth manifest, then renders the template with jinja2.

Dynamic values:
  - Service count (25, from compose.yml)
  - Pipeline count + step counts (14 pipelines, 230 steps)
  - Test count (12,291, from pytest --collect-only)
  - Module list (14, from pyproject.toml optional-deps)
  - Credential count (20, from api.auth.manifest)
  - Workflow count (7, from .gitea/workflows/)
  - src/ tree (generated from filesystem)

Usage:
  uv run python dev/scripts/gen_readme.py            # generate
  uv run python dev/scripts/gen_readme.py --check     # verify freshness
  uv run python dev/scripts/gen_readme.py --dry-run   # preview to stdout
2026-03-26 17:46:38 -04:00
..
backends
feat: OPPS express functions, pipe module, deploy script, CI green (fixes #267, #268, refs #282)
2026-03-26 01:52:07 -04:00
add_carrier_to_zotero.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
add_zipcode_to_zotero.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
bootstrap_certs.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
bootstrap_secrets.py
P18: eliminate remaining hardcoded values across the stack
2026-03-23 20:04:32 -04:00
build_product_susceptibility.py
data: product susceptibility scoring for kickback/fraud risk (refs #260)
2026-03-25 15:57:34 -04:00
build_skin_subs_analytics.py
data: ASP trajectories, market segmentation, utilization metrics (refs #234, #238, #239)
2026-03-25 14:53:34 -04:00
build_skin_subs_anomaly.py
data: geographic, setting, anomaly scoring, enforcement correlation (refs #240, #241, #242, #243)
2026-03-25 15:02:05 -04:00
build_skin_subs_evidence_base.py
data: evidence base builder + literature methods doc (refs #237, refs #244)
2026-03-25 11:33:32 -04:00
build_skin_subs_geo_setting.py
data: geographic, setting, anomaly scoring, enforcement correlation (refs #240, #241, #242, #243)
2026-03-25 15:02:05 -04:00
check_pdf_coverage.py
feat: scipdf plugin + PDF coverage tracker for skin-subs retrieval (refs #257)
2026-03-25 16:14:08 -04:00
collect_grey_lit_skin_subs.py
data: study characteristics, snowball citations, entity tags, expanded grey lit (refs #235, #236, #237, #244)
2026-03-25 11:56:49 -04:00
coverage_badge.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
download_opps_files.py
feat: OPPS rules CY2014-2026 + fixed download script (refs #264, #266)
2026-03-25 23:22:43 -04:00
enrich_entity_tags_and_load_duckdb.py
data: study characteristics, snowball citations, entity tags, expanded grey lit (refs #235, #236, #237, #244)
2026-03-25 11:56:49 -04:00
extract_study_characteristics.py
data: study characteristics, snowball citations, entity tags, expanded grey lit (refs #235, #236, #237, #244)
2026-03-25 11:56:49 -04:00
fetch_pdfs.py
feat: Cloudflare Worker PDF proxy + headless batch retrieval (fixes #273)
2026-03-25 21:54:44 -04:00
find_databricks_workspace.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
fix_zotero_dates.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
fix_zotero_keys.py
fix Zotero "key is not valid" errors blocking annotation saves
2026-03-21 23:31:00 -04:00
gen_config.py
feat: databricks-bundles Python resource loader — typed DAB resources
2026-03-25 00:29:13 -04:00
gen_readme.py
feat: jinja2 README templating — gen_readme.py renders from live codebase
2026-03-26 17:46:38 -04:00
generate_alr_filenames.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_alr_reference_tables.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
generate_alr_table_models.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_asr_table_models.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_bls_express.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
generate_cclf_docs.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
generate_cclf_filenames.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
generate_cclf_models.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_ccw_docs.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_ccw_models.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_cms_express.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_expressions.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_models.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_quality_measure_docs.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_reach_docs.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_reach_models.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_reach_participants.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
generate_skin_sub_claims.py
data: synthetic skin sub claims — 2,000 encounters, product + application codes
2026-03-25 10:09:20 -04:00
generate_ssp_county_models.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
generate_zot_tables.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
ingest_asp.py
data: ASP ingestion — strict skin sub filter, full provenance, 86 canonical URLs
2026-03-25 09:44:18 -04:00
ingest_opps.py
feat: OPPS file download + ingestion — 6 years of addenda into DuckDB (refs #264)
2026-03-25 22:40:19 -04:00
install_certs.sh
feat: skinny packages, tree reorg, cloud abstraction (refs #182–#201)
2026-03-24 15:00:26 -04:00
migrate_zotero.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
pkg_drift.py
feat: package supply chain — inventory, mirrors, drift, vuln scanning (refs #159–#168)
2026-03-24 17:02:30 -04:00
pkg_inventory.py
fix: pkg inventory parser — filter self-refs, parse optional-dependencies
2026-03-24 22:33:42 -04:00
pkg_issues.py
feat: package supply chain — inventory, mirrors, drift, vuln scanning (refs #159–#168)
2026-03-24 17:02:30 -04:00
pkg_mirror_sync.py
fix: mirror sync also skips local project name
2026-03-24 22:45:42 -04:00
populate_quality_measure_value_sets.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
register_seeds.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
scrape_bls_data.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
scrape_cms_data.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
search_pubmed_skin_subs.py
fix: bib.sync and XML parsers — Zotero key validation, creators, journalArticle, itertext
2026-03-25 14:04:32 -04:00
seed_col_tags.py
implement P6 bibliography: col tags, bib sync, generate models, lineage (fix #22, fix #23, fix #24, fix #25)
2026-03-12 17:25:30 -04:00
setup_unity_catalog.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
snowball_citations.py
fix: bib.sync and XML parsers — Zotero key validation, creators, journalArticle, itertext
2026-03-25 14:04:32 -04:00
test_databricks_connection.py
reorg dev/ into scripts/ and seeds/, add PY2024 value sets
2026-03-03 22:05:49 -05:00
test_network_isolation.sh
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00
unity_catalog_example.py
chore: clean sweep — lint, format, stale refs, generated artifacts
2026-03-24 17:33:55 -04:00