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skin-subs: Zotero evidence base — structured collection with full tagging #244

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opened 2026-03-25 05:36:45 +00:00 by kert · 2 comments
kert commented 2026-03-25 05:36:45 +00:00
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Objective

All evidence for the skin substitutes analysis captured and tagged in Zotero.

Tag Schema

  • module:skin-subs — all items in this research
  • source:pubmed, source:cochrane, source:cms-asp, source:cms-rule, source:oig, source:gao, source:medpac, source:court, source:mac-lcd, source:industry, source:doj
  • type:rct, type:review, type:meta-analysis, type:economic, type:policy, type:enforcement, type:market-data, type:indictment, type:settlement
  • entity:manufacturer, entity:distributor, entity:provider, entity:organogenesis, entity:mimedx, entity:apex-medical
  • case:jenson, case:gehrke, case:vohra
  • year:YYYY

Tasks

  • Create Zotero collection: "Skin Substitutes"
  • Sub-collections: Clinical Evidence, CMS/OIG Policy, Court Filings, Market Data, ASP Files
  • Import all PubMed search results
  • Manually add grey literature (OIG reports, CMS rules, court filings)
  • Apply tag schema to all items
  • Sync to data/bib.sqlite via existing bib.sync
  • Verify bib.Store.list_items(tags=["module:skin-subs"]) returns complete set
  • Link citations to DuckDB columns via Tag.col() where applicable
## Objective All evidence for the skin substitutes analysis captured and tagged in Zotero. ## Tag Schema - `module:skin-subs` — all items in this research - `source:pubmed`, `source:cochrane`, `source:cms-asp`, `source:cms-rule`, `source:oig`, `source:gao`, `source:medpac`, `source:court`, `source:mac-lcd`, `source:industry`, `source:doj` - `type:rct`, `type:review`, `type:meta-analysis`, `type:economic`, `type:policy`, `type:enforcement`, `type:market-data`, `type:indictment`, `type:settlement` - `entity:manufacturer`, `entity:distributor`, `entity:provider`, `entity:organogenesis`, `entity:mimedx`, `entity:apex-medical` - `case:jenson`, `case:gehrke`, `case:vohra` - `year:YYYY` ## Tasks - [ ] Create Zotero collection: "Skin Substitutes" - [ ] Sub-collections: Clinical Evidence, CMS/OIG Policy, Court Filings, Market Data, ASP Files - [ ] Import all PubMed search results - [ ] Manually add grey literature (OIG reports, CMS rules, court filings) - [ ] Apply tag schema to all items - [ ] Sync to `data/bib.sqlite` via existing `bib.sync` - [ ] Verify `bib.Store.list_items(tags=["module:skin-subs"])` returns complete set - [ ] Link citations to DuckDB columns via `Tag.col()` where applicable
kert added this to the P29: Skin Substitutes — predatory pricing, distribution, and utilization analysis milestone 2026-03-25 05:36:45 +00:00
kert commented 2026-03-25 15:39:39 +00:00
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~75% complete. PubMed search done (7,817 articles), grey lit catalogue done (20 docs), evidence base built with collections + COI enrichment. Remaining: PRISMA screening, snowball citation chasing, quantitative meta-analysis, Cochrane search, additional court filings/LCDs.

~75% complete. PubMed search done (7,817 articles), grey lit catalogue done (20 docs), evidence base built with collections + COI enrichment. Remaining: PRISMA screening, snowball citation chasing, quantitative meta-analysis, Cochrane search, additional court filings/LCDs.
kert commented 2026-03-25 15:59:40 +00:00
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~90% complete. Added: study characteristics table (7,817 rows, product/sample size extraction), forward snowball (2,415 new articles), entity tags (2,130 items), expanded grey lit (30 docs: +4 CMS rules, +3 LCDs, +2 court filings, +1 OIG). Evidence base in DuckDB (10,262 rows). Remaining: Cochrane, quantitative meta-analysis, GRADE assessment.

~90% complete. Added: study characteristics table (7,817 rows, product/sample size extraction), forward snowball (2,415 new articles), entity tags (2,130 items), expanded grey lit (30 docs: +4 CMS rules, +3 LCDs, +2 court filings, +1 OIG). Evidence base in DuckDB (10,262 rows). Remaining: Cochrane, quantitative meta-analysis, GRADE assessment.
kert closed this issue 2026-03-26 06:14:38 +00:00
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Reference: homelab/stack#244
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