kert a03801fb63 feat(bib): --docket scope for backfill-comments; drop ocr stub from refarm ...

An unscoped 'bib backfill-comments' walks every un-enriched reg.gov
stub in the store (~167k) at the 970/hr rate cap — a week-long crawl
that buried the freshly farmed CMS-2026-2377 comments (highest item
ids, ORDER BY i.id) at the back of the queue and blocked the P37
extract/index chain behind it. backfill_details now takes docket=,
filtering on the store's reg-docket:<id> tag, and the CLI forwards
--docket. The September refarm script uses it, and no longer calls
comments extract-ocr, a phase-2 stub that always exits 2 (#253) and
would have logged a spurious failed step every run.

refs #615

2026-08-14 15:23:11 -04:00

..

backends

feat(lake): M4 — DuckLakeContext write path + OPPS lake pilot (closes #513)

2026-07-10 23:03:29 -04:00

_lake.py

fix(lake): M5 covered OPPS only — build out PFS (refs #514)

2026-07-10 23:47:51 -04:00

add_carrier_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

add_cf_history_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

add_pprrvu_historical_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

add_zipcode_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

analyze_coordination.py

feat(comments): coordination + form-letter detection, no LLM required (refs #255)

2026-07-10 22:17:42 -04:00

bootstrap_certs.py

feat(llm): SSO-guarded RAG chat UI at llm.fhirworx.io (P34)

2026-07-17 16:52:28 -04:00

bootstrap_secrets.py

remove: scrub all woodpecker references from codebase

2026-04-18 18:51:21 -04:00

bootstrap_sso.py

feat(llm): SSO-guarded RAG chat UI at llm.fhirworx.io (P34)

2026-07-17 16:52:28 -04:00

build_product_susceptibility.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

build_skin_subs_analytics.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

build_skin_subs_anomaly.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

build_skin_subs_evidence_base.py

chore: prune dead code and refresh stale docs

2026-07-08 10:12:24 -04:00

build_skin_subs_geo_setting.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

check_freshness.py

feat(infra): version-pin freshness check + Renovate auto-bump for ARG pins

2026-07-08 19:55:44 -04:00

check_pdf_coverage.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

classify_comments.py

feat(comments): coordination + form-letter detection, no LLM required (refs #255)

2026-07-10 22:17:42 -04:00

collect_grey_lit_skin_subs.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

coverage_badge.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

download_opps_files.py

feat(opps): recover CY2014-2020 Addendum B + fix ingest finder

2026-07-08 14:48:17 -04:00

dump_zot_schema.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

enrich_entity_tags_and_load_duckdb.py

chore: prune dead code and refresh stale docs

2026-07-08 10:12:24 -04:00

extract_study_characteristics.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

fetch_fr_attachments.py

refactor(llm,rex): normalize FR text at capture; index-time strip becomes guard (refs #617)

2026-08-13 20:04:38 -04:00

fetch_nprm_addenda.py

feat(pfs): CY2027 NPRM addenda capture — fetch_nprm_addenda --year (refs #610)

2026-08-13 20:52:03 -04:00

fetch_pdfs.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

file_concurrency_issues.py

fix(scripts): resolve Gitea label names to IDs in issue filer

2026-07-08 15:43:25 -04:00

fix_zotero_dates.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

fix_zotero_keys.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

gen_config.py

remove: scrub all woodpecker references from codebase

2026-04-18 18:51:21 -04:00

gen_readme.py

remove: scrub all woodpecker references from codebase

2026-04-18 18:51:21 -04:00

generate_alr_filenames.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_alr_reference_tables.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_alr_table_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_asr_table_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_cclf_docs.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_cclf_filenames.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_cclf_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_ccw_docs.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_ccw_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_cms_express.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_expressions.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_quality_measure_docs.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_reach_docs.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_reach_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_reach_participants.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_skin_sub_claims.py

data: synthetic skin sub claims — 2,000 encounters, product + application codes

2026-03-25 10:09:20 -04:00

generate_ssp_county_models.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_zot_tables.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

ingest_asp.py

feat(conf): notebook read-replica aco.ro.duckdb (closes #510)

2026-07-10 22:23:57 -04:00

ingest_opps.py

fix(lake): M5 covered OPPS only — build out PFS (refs #514)

2026-07-10 23:47:51 -04:00

ingest_pfs.py

feat(pfs): multi-rule NPRM ingest — CY2026+CY2027 partitions (refs #612)

2026-08-13 22:03:52 -04:00

install_certs.sh

feat: public SSO — fhirworx.io domain, Gitea OAuth2, Cloudflare tunnel

2026-04-09 19:06:33 -04:00

llm_bakeoff.py

feat(llm): embed bake-off harness + P33 outcomes in spec (refs #564 #567)

2026-07-17 14:37:34 -04:00

migrate_fr_txt.py

refactor(llm,rex): normalize FR text at capture; index-time strip becomes guard (refs #617)

2026-08-13 20:04:38 -04:00

migrate_zotero.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

nb_fe_smoke.py

fix(ci): unbreak notebook quality gates first CI exercise

2026-07-10 11:36:25 -04:00

nb_integration.py

fix(notebooks): drop cascade errors from snapshot parsing

2026-07-10 11:38:30 -04:00

nb_issue_filer.py

feat(notebooks): quality gates — headless integration test, FE smoke gate, dedup issue auto-filer

2026-07-10 10:14:46 -04:00

nb_watcher.py

feat(notebooks): quality gates — headless integration test, FE smoke gate, dedup issue auto-filer

2026-07-10 10:14:46 -04:00

pkg_drift.py

feat: package supply chain — inventory, mirrors, drift, vuln scanning (refs #159–#168)

2026-03-24 17:02:30 -04:00

pkg_inventory.py

fix(ci): finish gitea→git container rename in pkg scripts; skip gitignored Dockerfiles in inventory

2026-07-09 21:27:02 -04:00

pkg_issues.py

fix(ci): finish gitea→git container rename in pkg scripts; skip gitignored Dockerfiles in inventory

2026-07-09 21:27:02 -04:00

pkg_mirror_sync.py

fix(ci): finish gitea→git container rename in pkg scripts; skip gitignored Dockerfiles in inventory

2026-07-09 21:27:02 -04:00

populate_quality_measure_value_sets.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

publish_reference_to_lake.py

fix(lake): publish cms schema (ingest_log) to DuckLake (refs #592 #594)

2026-08-13 10:38:22 -04:00

refarm_cms_2026_2377.sh

feat(bib): --docket scope for backfill-comments; drop ocr stub from refarm

2026-08-14 15:23:11 -04:00

register_seeds.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

scrape_cms_data.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

search_pubmed_skin_subs.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

seed_col_tags.py

implement P6 bibliography: col tags, bib sync, generate models, lineage (fix #22, fix #23, fix #24, fix #25)

2026-03-12 17:25:30 -04:00

setup_unity_catalog.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

snowball_citations.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

sync_secrets.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

test_network_isolation.sh

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

unity_catalog_example.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

zotero_archive_migrate.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

zotero_fix_fields.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00