kert bf9485e634 feat(lead): stack lead release build/verify — BagIt + RO-Crate review releases ...

Each LEAD living-review update becomes a BagIt 1.0 bag (sha512
manifests, Payload-Oxum, bag-info with the OSF registration DOI and git
commit) holding the protocol (OSF registration 8wq3m, verbatim and
rendered), the evidence ledger tables, human screening decisions and
PRISMA flow counts, included/screened bibliography as CSL-JSON, the
theme vocabulary, and a source-only code archive (src, config,
dev/scripts, specs — no third-party documents). RO-Crate 1.2 metadata
describes every payload file with its sha256 and records the build.
Reviewer email addresses are replaced with reviewer-N. Builds are
deterministic for the same inputs; verify checks manifests, Oxum and
the crate. Stdlib only, no new dependencies.

2026-11-11 15:09:46 -05:00

..

aco

feat(cms): vendor the institutional provider universe (CCN ↔ NPI ↔ TIN) from data.cms.gov; give carrier lines their billed TIN

2026-10-25 17:33:13 -04:00

api

fix(api): Gitea client falls back to the public URL off the compose net

2026-11-11 13:19:30 -05:00

bcda

fix(bcda): leave race and sex null when the source sends a null flavor

2026-11-11 12:54:16 -05:00

bib

fix(bib): host-side Zotero sync skips copies it cannot read

2026-11-11 14:27:47 -05:00

bls

feat(lead): load the public mirror and serve the explorer

2026-11-02 00:22:35 -05:00

ccw

add test coverage for CMS table models, CMS logging, and CCW tables/docs

2026-02-28 20:44:53 -05:00

cli

fix(comments): extract attachment text nightly, sealed or not

2026-11-11 15:05:54 -05:00

cms

feat(cms): vendor the institutional provider universe (CCN ↔ NPI ↔ TIN) from data.cms.gov; give carrier lines their billed TIN

2026-10-25 17:33:13 -04:00

conf

fix(conf,llm,compose): the DuckDB replica lives in data/replica/ (refs P48)

2026-09-08 23:23:59 -04:00

dev

fix(deploy): diff from the last successful deploy, not the previous push

2026-10-27 15:57:47 -04:00

docs

fix(docs): self-consistent, hermetic library export (closes #623)

2026-08-14 15:10:48 -04:00

econ

fix: close the part 1 review minors

2026-10-31 22:00:04 -04:00

lead

feat(lead): stack lead release build/verify — BagIt + RO-Crate review releases

2026-11-11 15:09:46 -05:00

llm

feat(llm): LLM_INSTRUCT_MODEL overrides the instruct model per run

2026-11-11 15:01:59 -05:00

mail

fix(mail): IMAP-acct invariant, test isolation, mail-poller healthcheck

2026-05-21 08:58:18 -04:00

nlm

feat(nlm): UMLS / SNOMED CT / RxNorm releases and VSAC value sets

2026-10-27 13:00:28 -04:00

notebooks

feat(pfs): event study around code-family exposures — pfs.event_study + notebooks/event_study.py (refs #696)

2026-09-22 16:40:06 -04:00

opps

fix(opps): CY2020 CF→80.784 (NFRM) + verify all 13 years vs Addendum B

2026-07-08 14:52:17 -04:00

perf

fix(perf): let the collector trace fixture replace an existing provider

2026-10-31 21:31:29 -04:00

pfs

feat(pfs): CY2027 final rule parameters; fix CY2025/2026 telehealth fees

2026-11-11 13:23:47 -05:00

prisma

fix: close the part 1 review minors

2026-10-31 22:00:04 -04:00

qpp

fix(qpp): payment-year keyed thresholds — correct 2023/2024/2026; CAA 2026 supersession (refs #620 #613)

2026-08-13 22:14:35 -04:00

rec

feat(rec): OppsPricer — reconcile OPPS APC rates vs Addendum B

2026-07-08 10:38:48 -04:00

rex

feat(rex,pfs): EPUB attachments readable by the corpus indexer (F2)

2026-09-09 21:11:04 -04:00

sem

fix(hooks): run pre-commit pytest without git's repo-locating env

2026-10-27 10:58:22 -04:00

zot

fix(zot): match the models to Zotero's migrated schema

2026-10-29 15:01:42 -04:00

__init__.py

add comprehensive test suite, CI/CD quality gates, and package publishing

2026-02-28 14:58:48 -05:00

conftest.py

fix(llm): thread-local bib Store; deterministic collapse; unique labels; era coverage; system prompt; prompt budget (refs #691 #692)

2026-09-10 13:19:03 -04:00

test_ast_coverage.py

feat: OPPS express functions, pipe module, deploy script, CI green (fixes #267, #268, refs #282)

2026-03-26 01:52:07 -04:00

test_bootstrap_certs.py

feat: public SSO — fhirworx.io domain, Gitea OAuth2, Cloudflare tunnel

2026-04-09 19:06:33 -04:00

test_compose_mounts.py

test(compose): treat ./.state/ bind mounts as runtime state, like ./data/

2026-10-27 11:05:24 -04:00

test_dab_generator.py

feat(bcda): rewrite the input_layer connector for v3 semantics

2026-10-25 13:42:24 -04:00

test_final_13_lines.py

style: fix ruff import sorting in test_final_13_lines

2026-04-18 11:45:40 -04:00

test_final_coverage_gaps.py

merge: BCDA v3 (P52, PR #1140) into main — the checkout now lives on main

2026-10-27 14:02:46 -04:00

test_last_22_lines.py

test: push toward 100% — pragma untestable lines + targeted gap tests

2026-04-18 11:06:08 -04:00

test_notebook_layout.py

fix(ci): sync test schema, compose hardening, stale test assertions

2026-04-16 12:12:43 -04:00

test_observability.py

fix(perf,infra): actually export the metrics — /metrics route, perf extra in the api/llm images, scrape targets, telemetry on (refs #579)

2026-09-11 18:59:40 -04:00

test_remaining_gaps.py

fix(hooks): run pre-commit pytest without git's repo-locating env

2026-10-27 10:58:22 -04:00

test_single_line_gaps.py

test: 99.93% coverage — Zotero 9 schema fix + 400+ new tests

2026-04-18 10:06:47 -04:00