kert 87c2e8427c fix(comments): extract attachment text nightly, sealed or not ...

Nothing ran 'stack comments extract' on a schedule, and extract skipped
every sealed docket outright. 28 dockets (~29k comments with
attachments, including every OPPS/IPPS docket) were sealed before
anyone extracted them, so the tagger and the chat index only ever saw
their 'see attached' stubs. Comment Pull now extracts between pull and
index, and a seal skips only a fully extracted docket.

2026-11-11 15:05:54 -05:00

..

backends

fix(comments): extract attachment text nightly, sealed or not

2026-11-11 15:05:54 -05:00

_lake.py

fix(lake): M5 covered OPPS only — build out PFS (refs #514)

2026-07-10 23:47:51 -04:00

add_ama_coding_to_zotero.py

style: ruff-format two dev scripts; marimo stamps sample.py with 0.23.13

2026-10-27 14:32:39 -04:00

add_carrier_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

add_cf_history_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

add_pprrvu_historical_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

add_zipcode_to_zotero.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

analyze_coordination.py

feat(comments): coordination + form-letter detection, no LLM required (refs #255)

2026-07-10 22:17:42 -04:00

backfill_body_sha1.py

fix(bib,cli): durable merge-log path, empty-body alias guard, body_sha1 backfill (refs #665)

2026-08-26 15:46:34 -04:00

bootstrap_certs.py

feat(llm): SSO-guarded RAG chat UI at llm.fhirworx.io (P34)

2026-07-17 16:52:28 -04:00

bootstrap_secrets.py

remove: scrub all woodpecker references from codebase

2026-04-18 18:51:21 -04:00

bootstrap_sso.py

feat(infra): landing-page health badges and the reach alias

2026-11-11 12:57:04 -05:00

build_product_susceptibility.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

build_skin_subs_analytics.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

build_skin_subs_anomaly.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

build_skin_subs_evidence_base.py

chore: prune dead code and refresh stale docs

2026-07-08 10:12:24 -04:00

build_skin_subs_geo_setting.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

check_freshness.py

feat(infra): version-pin freshness check + Renovate auto-bump for ARG pins

2026-07-08 19:55:44 -04:00

check_pdf_coverage.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

classify_comments.py

feat(comments): coordination + form-letter detection, no LLM required (refs #255)

2026-07-10 22:17:42 -04:00

collect_grey_lit_skin_subs.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

coverage_badge.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

dedupe_attachments.py

fix(dev): dedupe unlinks after commit; report removed keys (refs #615)

2026-09-08 15:42:25 -04:00

dedupe_bib_legacy.py

feat(bib): legacy dedupe script — merge same-url and re-sent-email rows (refs #665)

2026-08-26 14:09:02 -04:00

download_opps_files.py

feat(opps): recover CY2014-2020 Addendum B + fix ingest finder

2026-07-08 14:48:17 -04:00

dump_zot_schema.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

enrich_entity_tags_and_load_duckdb.py

chore: prune dead code and refresh stale docs

2026-07-08 10:12:24 -04:00

extract_study_characteristics.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

fetch_fr_attachments.py

refactor(llm,rex): normalize FR text at capture; index-time strip becomes guard (refs #617)

2026-08-13 20:04:38 -04:00

fetch_nprm_addenda.py

feat(pfs): register NPRM Addendum E (proposed GPCIs) in bib (refs #629)

2026-08-17 12:13:57 -04:00

fetch_pdfs.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

file_concurrency_issues.py

fix(scripts): resolve Gitea label names to IDs in issue filer

2026-07-08 15:43:25 -04:00

fix_zotero_dates.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

fix_zotero_keys.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

gen_bcda_v3_crosswalk.py

chore(bcda): vendor CMSgov/bcda-app + bcda.cms.gov v3 artefacts sparsely, flatten the v3 data dictionary into crosswalk seeds, weekly drift workflow

2026-10-25 13:08:05 -04:00

gen_config.py

fix(ci): green main again — notebooks extra is an aggregate; no Dockerfile heredoc

2026-10-29 16:58:50 -04:00

gen_readme.py

remove: scrub all woodpecker references from codebase

2026-04-18 18:51:21 -04:00

generate_alr_filenames.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_alr_reference_tables.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_alr_table_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_asr_table_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_cclf_docs.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_cclf_filenames.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_cclf_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_ccw_docs.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_ccw_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_cms_express.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_expressions.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_quality_measure_docs.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_reach_docs.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_reach_models.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_reach_participants.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

generate_skin_sub_claims.py

data: synthetic skin sub claims — 2,000 encounters, product + application codes

2026-03-25 10:09:20 -04:00

generate_ssp_county_models.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

generate_zot_tables.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

import_lead_corpus.py

feat(bib): vendor the staged LEAD corpus documents into the library

2026-10-27 12:38:39 -04:00

ingest_asp.py

feat(conf): notebook read-replica aco.ro.duckdb (closes #510)

2026-07-10 22:23:57 -04:00

ingest_opps.py

fix(lake): M5 covered OPPS only — build out PFS (refs #514)

2026-07-10 23:47:51 -04:00

ingest_pfs.py

feat(pfs): NPRM Addendum E loader -> pfs.gpci_proposed + ingest wiring (closes #629)

2026-08-17 12:16:17 -04:00

install_certs.sh

feat: public SSO — fhirworx.io domain, Gitea OAuth2, Cloudflare tunnel

2026-04-09 19:06:33 -04:00

llm_bakeoff.py

feat(llm): embed bake-off harness + P33 outcomes in spec (refs #564 #567)

2026-07-17 14:37:34 -04:00

llm_golden.py

fix(ci,llm): golden runner exits 0 when filing issues; workflow keeps the report on failure; cmd_run tests (refs #692)

2026-09-10 12:12:59 -04:00

llm_vocab_candidates.py

feat(llm): closed theme vocabulary for comment tagging — themes.yaml v1, llm.vocab loader, stack llm vocab, P35 design spec (refs #574)

2026-09-22 16:48:51 -04:00

marimo_latest.py

fix(renovate): land updates on main without PRs, daily, with github.com lookups

2026-10-29 17:00:39 -04:00

migrate_fr_txt.py

refactor(llm,rex): normalize FR text at capture; index-time strip becomes guard (refs #617)

2026-08-13 20:04:38 -04:00

migrate_zotero.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

nb_fe_smoke.py

fix(ci): unbreak notebook quality gates first CI exercise

2026-07-10 11:36:25 -04:00

nb_integration.py

fix(notebooks): drop cascade errors from snapshot parsing

2026-07-10 11:38:30 -04:00

nb_issue_filer.py

feat(notebooks): quality gates — headless integration test, FE smoke gate, dedup issue auto-filer

2026-07-10 10:14:46 -04:00

nb_watcher.py

feat(notebooks): quality gates — headless integration test, FE smoke gate, dedup issue auto-filer

2026-07-10 10:14:46 -04:00

osf_metadata.py

docs(lead): design self-hosted review releases and a tagging-quality gate

2026-11-11 13:52:42 -05:00

pkg_drift.py

feat: package supply chain — inventory, mirrors, drift, vuln scanning (refs #159–#168)

2026-03-24 17:02:30 -04:00

pkg_inventory.py

fix(ci): finish gitea→git container rename in pkg scripts; skip gitignored Dockerfiles in inventory

2026-07-09 21:27:02 -04:00

pkg_issues.py

fix(ci): make image and package scanning see again

2026-10-27 11:04:54 -04:00

pkg_mirror_sync.py

fix(ci): finish gitea→git container rename in pkg scripts; skip gitignored Dockerfiles in inventory

2026-07-09 21:27:02 -04:00

populate_quality_measure_value_sets.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

publish_reference_to_lake.py

feat(lake): publish gpci_proposed + primary_care_service_code to DuckLake (closes #630)

2026-08-17 12:17:35 -04:00

register_seeds.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

scrape_cms_data.py

reorg dev/ into scripts/ and seeds/, add PY2024 value sets

2026-03-03 22:05:49 -05:00

search_pubmed_palliative_rfi.py

style: ruff-format two dev scripts; marimo stamps sample.py with 0.23.13

2026-10-27 14:32:39 -04:00

search_pubmed_skin_subs.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

seed_col_tags.py

implement P6 bibliography: col tags, bib sync, generate models, lineage (fix #22, fix #23, fix #24, fix #25)

2026-03-12 17:25:30 -04:00

setup_unity_catalog.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

snowball_citations.py

fix(bib): elink snowball merged all seeds into one LinkSet; criteria clause (f) for code-family arm (refs #652)

2026-08-18 12:10:58 -04:00

sync_secrets.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

tag_palliative_comments.py

feat(comments): palliative-mention sweep — topic:palliative tags + extra_json snippets (refs #660)

2026-08-19 12:25:53 -04:00

test_network_isolation.sh

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

unity_catalog_example.py

chore: clean sweep — lint, format, stale refs, generated artifacts

2026-03-24 17:33:55 -04:00

vendor_bcda_app.py

chore(bcda): vendor CMSgov/bcda-app + bcda.cms.gov v3 artefacts sparsely, flatten the v3 data dictionary into crosswalk seeds, weekly drift workflow

2026-10-25 13:08:05 -04:00

zotero_archive_migrate.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00

zotero_fix_fields.py

feat: full session — mail servers, comment pipeline, PRISMA fetch, email ingest

2026-04-16 09:04:38 -04:00