- bcda/client.py: output_dir default → conf.path("storage.bcda")
- bcda/express/flatten.py: store_path default → conf.path("storage.bcda")
- notebooks: eliminate all /home/kert/ absolute paths from
bib_explorer.py and zotero_tutorial.py
- generate_quality_measure_docs.py: complete truncated f-string at
line 561 (file was committed incomplete), add return statement
- test_client.py: update default assertion to match conf-resolved path
968 lines
32 KiB
Python
968 lines
32 KiB
Python
"""Tests for bcda.client — BCDA bulk FHIR export client."""
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from __future__ import annotations
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import gzip
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from unittest.mock import patch
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import httpx
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import pytest
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from bcda.client import (
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SANDBOX,
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BcdaError,
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Client,
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JobExpiredError,
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)
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# ── Helpers ──────────────────────────────────────────────────
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def _token_response(
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token: str = "tok123",
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expires_in: int = 1200,
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) -> httpx.Response:
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"""Build a mock token response."""
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return httpx.Response(
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200,
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json={"access_token": token, "expires_in": expires_in},
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)
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def _make_transport(handler):
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"""Build an httpx.MockTransport from a handler function."""
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return httpx.MockTransport(handler)
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def _client(transport, **kw) -> Client:
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"""Build a Client with a mock transport injected."""
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c = Client("cid", "csec", **kw)
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c._http = httpx.Client(transport=transport)
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return c
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# ── Authentication ───────────────────────────────────────────
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class TestAuthenticate:
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def test_basic_auth(self) -> None:
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"""POST /auth/token with basic-auth header returns token."""
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captured = {}
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def handler(req: httpx.Request) -> httpx.Response:
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captured["auth"] = req.headers.get("authorization", "")
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return _token_response()
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c = _client(_make_transport(handler))
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tok = c.authenticate()
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assert tok == "tok123"
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assert "Basic" in captured["auth"]
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c.close()
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@patch("time.monotonic", return_value=100.0)
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def test_token_expiry(self, _mono) -> None:
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"""Token expires at monotonic + expires_in - 30."""
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c = _client(_make_transport(lambda _: _token_response(expires_in=600)))
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c.authenticate()
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# Should be 100 + 600 - 30 = 670
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assert c._token_expires_at == 670.0
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c.close()
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@patch("time.monotonic", return_value=100.0)
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def test_default_expires_in(self, _mono) -> None:
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"""When expires_in is missing, default TOKEN_LIFETIME is used."""
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resp = httpx.Response(200, json={"access_token": "t"})
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c = _client(_make_transport(lambda _: resp))
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c.authenticate()
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# 100 + 1200 - 30 = 1270
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assert c._token_expires_at == 1270.0
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c.close()
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class TestTokenValid:
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@patch("time.monotonic", return_value=50.0)
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def test_valid(self, _mono) -> None:
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c = Client("a", "b")
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c._token = "tok"
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c._token_expires_at = 100.0
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assert c._token_valid is True
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c.close()
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@patch("time.monotonic", return_value=200.0)
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def test_expired(self, _mono) -> None:
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c = Client("a", "b")
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c._token = "tok"
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c._token_expires_at = 100.0
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assert c._token_valid is False
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c.close()
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def test_no_token(self) -> None:
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c = Client("a", "b")
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assert c._token_valid is False
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c.close()
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class TestAuthHeaders:
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@patch("time.monotonic", return_value=50.0)
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def test_valid_token_no_reauth(self, _mono) -> None:
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c = Client("a", "b")
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c._token = "already"
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c._token_expires_at = 100.0
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h = c._auth_headers()
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assert h == {"Authorization": "Bearer already"}
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c.close()
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def test_expired_token_reauthenticates(self) -> None:
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c = _client(_make_transport(lambda _: _token_response("fresh")))
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# Token is empty, so _token_valid is False.
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h = c._auth_headers()
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assert h == {"Authorization": "Bearer fresh"}
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c.close()
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# ── Context manager ──────────────────────────────────────────
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class TestContextManager:
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def test_enter_exit(self) -> None:
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with Client("a", "b") as c:
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assert isinstance(c, Client)
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# Should not raise after exit.
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# ── _request retry logic ────────────────────────────────────
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class TestRequest:
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@patch("time.sleep")
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def test_401_refreshes_once(self, _sleep) -> None:
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"""On 401, re-authenticate once and retry."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response("new_tok")
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call_count += 1
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if call_count == 1:
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return httpx.Response(401)
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return httpx.Response(200, json={"ok": True})
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c = _client(_make_transport(handler))
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c._token = "old"
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c._token_expires_at = float("inf")
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resp = c._request("GET", f"{SANDBOX}/test")
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assert resp.status_code == 200
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c.close()
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@patch("time.sleep")
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def test_429_retries_with_retry_after(self, mock_sleep) -> None:
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"""On 429, sleep for Retry-After seconds and retry."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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if call_count == 1:
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return httpx.Response(
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429,
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headers={"Retry-After": "5"},
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)
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return httpx.Response(200, json={"ok": True})
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c = _client(_make_transport(handler))
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resp = c._request("GET", f"{SANDBOX}/test")
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assert resp.status_code == 200
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mock_sleep.assert_called_with(5)
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c.close()
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@patch("time.sleep")
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def test_429_default_retry_after(self, mock_sleep) -> None:
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"""429 without Retry-After defaults to 60s."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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if call_count == 1:
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return httpx.Response(429)
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return httpx.Response(200, json={"ok": True})
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c = _client(_make_transport(handler))
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resp = c._request("GET", f"{SANDBOX}/test")
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assert resp.status_code == 200
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mock_sleep.assert_called_with(60)
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c.close()
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@patch("time.sleep")
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def test_5xx_backoff(self, mock_sleep) -> None:
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"""5xx triggers exponential backoff."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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if call_count < 3:
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return httpx.Response(500)
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return httpx.Response(200, json={"ok": True})
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c = _client(_make_transport(handler), retry_interval=1.0)
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resp = c._request("GET", f"{SANDBOX}/test")
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assert resp.status_code == 200
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# Two sleeps: 1.0 then 2.0
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assert mock_sleep.call_count == 2
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c.close()
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@patch("time.sleep")
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def test_5xx_exhausted_raises(self, mock_sleep) -> None:
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"""5xx on all attempts raises HTTPStatusError."""
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(500)
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c = _client(_make_transport(handler), max_retries=2)
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with pytest.raises(httpx.HTTPStatusError):
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c._request("GET", f"{SANDBOX}/test")
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c.close()
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@patch("time.sleep")
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def test_connect_error_retries(self, mock_sleep) -> None:
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"""ConnectError triggers backoff then raises BcdaError."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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raise httpx.ConnectError("refused")
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c = _client(_make_transport(handler), max_retries=2)
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with pytest.raises(BcdaError, match="failed after 2 attempts"):
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c._request("GET", f"{SANDBOX}/test")
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c.close()
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@patch("time.sleep")
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def test_connect_error_succeeds_on_retry(self, mock_sleep) -> None:
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"""ConnectError on first attempt, success on second."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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if call_count == 1:
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raise httpx.ConnectError("refused")
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return httpx.Response(200, json={"ok": True})
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c = _client(_make_transport(handler), max_retries=3)
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resp = c._request("GET", f"{SANDBOX}/test")
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assert resp.status_code == 200
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c.close()
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@patch("time.sleep")
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def test_read_timeout_retries(self, mock_sleep) -> None:
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"""ReadTimeout triggers backoff."""
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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if call_count == 1:
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raise httpx.ReadTimeout("timed out")
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return httpx.Response(200, json={"ok": True})
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c = _client(_make_transport(handler), max_retries=3)
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resp = c._request("GET", f"{SANDBOX}/test")
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assert resp.status_code == 200
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c.close()
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def test_410_raises_job_expired(self) -> None:
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"""410 Gone raises JobExpiredError."""
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(410)
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c = _client(_make_transport(handler))
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with pytest.raises(JobExpiredError, match="410"):
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c._request("GET", f"{SANDBOX}/test")
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c.close()
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def test_no_auth(self) -> None:
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"""auth_required=False skips token."""
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def handler(req: httpx.Request) -> httpx.Response:
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assert "Authorization" not in req.headers
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return httpx.Response(200, json={})
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c = _client(_make_transport(handler))
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resp = c._request(
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"GET",
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f"{SANDBOX}/test",
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auth_required=False,
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retry=False,
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)
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assert resp.status_code == 200
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c.close()
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def test_no_retry(self) -> None:
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"""retry=False means only one attempt."""
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(200, json={})
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c = _client(_make_transport(handler))
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resp = c._request(
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"GET",
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f"{SANDBOX}/test",
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retry=False,
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)
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assert resp.status_code == 200
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c.close()
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def test_client_error_raises(self) -> None:
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"""Non-retryable client errors (e.g. 403) raise immediately."""
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(403)
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c = _client(_make_transport(handler))
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with pytest.raises(httpx.HTTPStatusError):
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c._request("GET", f"{SANDBOX}/test")
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c.close()
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def test_extra_headers_merged(self) -> None:
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"""Extra headers are merged with auth headers."""
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captured = {}
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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captured["accept"] = req.headers.get("accept", "")
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return httpx.Response(200, json={})
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c = _client(_make_transport(handler))
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c._request(
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"GET",
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f"{SANDBOX}/test",
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headers={"Accept": "application/fhir+json"},
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)
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assert captured["accept"] == "application/fhir+json"
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c.close()
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def test_params_forwarded(self) -> None:
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"""Query params are forwarded."""
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captured = {}
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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captured["url"] = str(req.url)
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return httpx.Response(200, json={})
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c = _client(_make_transport(handler))
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c._request(
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"GET",
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f"{SANDBOX}/test",
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params={"_type": "Patient"},
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)
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assert "_type=Patient" in captured["url"]
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c.close()
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# ── Export flow ──────────────────────────────────────────────
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class TestStartExport:
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def test_returns_job_url(self) -> None:
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(
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202,
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headers={"Content-Location": "https://x/jobs/1"},
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)
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c = _client(_make_transport(handler))
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url = c.start_export()
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assert url == "https://x/jobs/1"
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c.close()
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def test_with_types_and_since(self) -> None:
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captured = {}
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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captured["url"] = str(req.url)
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return httpx.Response(
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202,
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headers={"Content-Location": "https://x/jobs/2"},
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)
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c = _client(_make_transport(handler))
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c.start_export(
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types=["Patient", "Coverage"],
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since="2025-01-01T00:00:00-05:00",
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)
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assert "_type=Patient%2CCoverage" in captured["url"]
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assert "_since=" in captured["url"]
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c.close()
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def test_non_202_raises(self) -> None:
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(200, json={})
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c = _client(_make_transport(handler))
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with pytest.raises(BcdaError, match="Expected 202"):
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c.start_export()
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c.close()
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def test_custom_endpoint(self) -> None:
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captured = {}
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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captured["url"] = str(req.url)
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return httpx.Response(
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202,
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headers={"Content-Location": "https://x/jobs/3"},
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)
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c = _client(_make_transport(handler))
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c.start_export(endpoint="Patient")
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assert "/Patient/$export" in captured["url"]
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c.close()
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class TestPoll:
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@patch("time.sleep")
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def test_poll_completes(self, mock_sleep) -> None:
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call_count = 0
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def handler(req: httpx.Request) -> httpx.Response:
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nonlocal call_count
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if "/auth/token" in str(req.url):
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return _token_response()
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call_count += 1
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if call_count < 3:
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return httpx.Response(
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202,
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headers={"X-Progress": "50%"},
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)
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return httpx.Response(
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200,
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json={"output": [{"url": "x", "type": "Patient"}]},
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)
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c = _client(_make_transport(handler))
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result = c.poll("https://x/jobs/1", interval=1.0)
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assert "output" in result
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assert mock_sleep.call_count == 2
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c.close()
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|
@patch("time.monotonic")
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@patch("time.sleep")
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def test_poll_timeout(self, mock_sleep, mock_mono) -> None:
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# Use a default return so we never run out of values.
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# Key calls: poll deadline (100), authenticate (50),
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# token_valid (50), deadline check (104 => 104+2>105).
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mock_mono.return_value = 104.0
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mock_mono.side_effect = None
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call_values = iter([100.0, 50.0, 50.0, 50.0, 104.0, 104.0])
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mock_mono.side_effect = lambda: next(call_values, 104.0)
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def handler(req: httpx.Request) -> httpx.Response:
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if "/auth/token" in str(req.url):
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return _token_response()
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return httpx.Response(
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202,
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headers={"X-Progress": "10%"},
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)
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c = _client(_make_transport(handler))
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with pytest.raises(BcdaError, match="Poll timeout"):
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c.poll("https://x/jobs/1", interval=2.0, timeout=5.0)
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c.close()
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@patch("time.sleep")
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def test_poll_no_progress_header(self, mock_sleep) -> None:
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"""202 without X-Progress header uses 'unknown'."""
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call_count = 0
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|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
nonlocal call_count
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
call_count += 1
|
|
if call_count == 1:
|
|
return httpx.Response(202)
|
|
return httpx.Response(200, json={"output": []})
|
|
|
|
c = _client(_make_transport(handler))
|
|
result = c.poll("https://x/jobs/1", interval=0.0)
|
|
assert result == {"output": []}
|
|
c.close()
|
|
|
|
@patch("time.sleep")
|
|
def test_poll_with_errors(self, mock_sleep) -> None:
|
|
"""Completed job with error field."""
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(
|
|
200,
|
|
json={
|
|
"output": [{"url": "x", "type": "P"}],
|
|
"error": [{"url": "e", "type": "OperationOutcome"}],
|
|
},
|
|
)
|
|
|
|
c = _client(_make_transport(handler))
|
|
result = c.poll("https://x/jobs/1")
|
|
assert len(result["error"]) == 1
|
|
c.close()
|
|
|
|
|
|
class TestDownload:
|
|
def test_downloads_files(self, tmp_path) -> None:
|
|
content = b'{"id":"1"}\n{"id":"2"}\n'
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=content)
|
|
|
|
c = _client(_make_transport(handler), output_dir=tmp_path)
|
|
result = {
|
|
"output": [
|
|
{"url": "https://x/data/1/Patient", "type": "Patient"},
|
|
],
|
|
}
|
|
paths = c.download(result)
|
|
assert len(paths) == 1
|
|
assert paths[0].name == "Patient.ndjson"
|
|
assert paths[0].read_bytes() == content
|
|
c.close()
|
|
|
|
def test_duplicate_types(self, tmp_path) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=b"{}\n")
|
|
|
|
c = _client(_make_transport(handler), output_dir=tmp_path)
|
|
result = {
|
|
"output": [
|
|
{"url": "https://x/1", "type": "EOB"},
|
|
{"url": "https://x/2", "type": "EOB"},
|
|
],
|
|
}
|
|
paths = c.download(result)
|
|
assert paths[0].name == "EOB.ndjson"
|
|
assert paths[1].name == "EOB.1.ndjson"
|
|
c.close()
|
|
|
|
def test_unknown_type(self, tmp_path) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=b"{}\n")
|
|
|
|
c = _client(_make_transport(handler), output_dir=tmp_path)
|
|
result = {"output": [{"url": "https://x/1"}]}
|
|
paths = c.download(result)
|
|
assert paths[0].name == "unknown.ndjson"
|
|
c.close()
|
|
|
|
def test_error_files_downloaded(self, tmp_path) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=b"{}\n")
|
|
|
|
c = _client(_make_transport(handler), output_dir=tmp_path)
|
|
result = {
|
|
"output": [],
|
|
"error": [
|
|
{
|
|
"url": "https://x/data/1/err-uuid",
|
|
"type": "OperationOutcome",
|
|
},
|
|
],
|
|
}
|
|
paths = c.download(result)
|
|
assert len(paths) == 0 # error files not in returned list
|
|
err_files = list(tmp_path.glob("*error*"))
|
|
assert len(err_files) == 1
|
|
c.close()
|
|
|
|
def test_custom_output_dir(self, tmp_path) -> None:
|
|
custom = tmp_path / "custom"
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=b"{}\n")
|
|
|
|
c = _client(_make_transport(handler))
|
|
result = {"output": [{"url": "https://x/1", "type": "P"}]}
|
|
paths = c.download(result, output_dir=custom)
|
|
assert paths[0].parent == custom
|
|
c.close()
|
|
|
|
|
|
class TestDownloadFile:
|
|
def test_gzip_content_encoding(self, tmp_path) -> None:
|
|
"""gzip Content-Encoding is decompressed."""
|
|
raw = b'{"id":"1"}\n'
|
|
compressed = gzip.compress(raw)
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(
|
|
200,
|
|
content=compressed,
|
|
headers={"Content-Encoding": "gzip"},
|
|
)
|
|
|
|
c = _client(_make_transport(handler))
|
|
dest = tmp_path / "out.ndjson"
|
|
c._download_file("https://x/data", dest)
|
|
assert dest.read_bytes() == raw
|
|
c.close()
|
|
|
|
def test_gzip_magic_bytes(self, tmp_path) -> None:
|
|
"""gzip data detected by magic bytes is decompressed."""
|
|
raw = b'{"id":"1"}\n'
|
|
compressed = gzip.compress(raw)
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=compressed)
|
|
|
|
c = _client(_make_transport(handler))
|
|
dest = tmp_path / "out.ndjson"
|
|
c._download_file("https://x/data", dest)
|
|
assert dest.read_bytes() == raw
|
|
c.close()
|
|
|
|
def test_plain_content(self, tmp_path) -> None:
|
|
"""Non-gzip content is written as-is."""
|
|
raw = b'{"id":"1"}\n'
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=raw)
|
|
|
|
c = _client(_make_transport(handler))
|
|
dest = tmp_path / "out.ndjson"
|
|
c._download_file("https://x/data", dest)
|
|
assert dest.read_bytes() == raw
|
|
c.close()
|
|
|
|
def test_bad_gzip_fallback(self, tmp_path) -> None:
|
|
"""Data starting with gzip magic but not valid gzip is kept."""
|
|
# Starts with gzip magic but is not valid gzip
|
|
bad = b"\x1f\x8b" + b"not-gzip-data"
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, content=bad)
|
|
|
|
c = _client(_make_transport(handler))
|
|
dest = tmp_path / "out.ndjson"
|
|
c._download_file("https://x/data", dest)
|
|
assert dest.read_bytes() == bad
|
|
c.close()
|
|
|
|
|
|
# ── Export (full flow) ───────────────────────────────────────
|
|
|
|
|
|
class TestExport:
|
|
@patch("time.sleep")
|
|
def test_full_export(self, mock_sleep, tmp_path) -> None:
|
|
"""export() chains start, poll, download."""
|
|
call_count = 0
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
nonlocal call_count
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
url = str(req.url)
|
|
if "$export" in url:
|
|
return httpx.Response(
|
|
202,
|
|
headers={
|
|
"Content-Location": "https://x/jobs/42",
|
|
},
|
|
)
|
|
if "/jobs/42" in url:
|
|
call_count += 1
|
|
if call_count == 1:
|
|
return httpx.Response(202)
|
|
return httpx.Response(
|
|
200,
|
|
json={
|
|
"output": [
|
|
{
|
|
"url": "https://x/data/Patient",
|
|
"type": "Patient",
|
|
},
|
|
],
|
|
},
|
|
)
|
|
# Data download
|
|
return httpx.Response(200, content=b'{"id":"1"}\n')
|
|
|
|
c = _client(_make_transport(handler), output_dir=tmp_path)
|
|
paths = c.export(
|
|
types=["Patient"],
|
|
since="2025-01-01T00:00:00-05:00",
|
|
poll_interval=0.1,
|
|
)
|
|
assert len(paths) == 1
|
|
assert paths[0].name == "Patient.ndjson"
|
|
c.close()
|
|
|
|
|
|
# ── Job management ───────────────────────────────────────────
|
|
|
|
|
|
class TestCancel:
|
|
def test_cancel(self) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
assert req.method == "DELETE"
|
|
return httpx.Response(202)
|
|
|
|
c = _client(_make_transport(handler))
|
|
c.cancel("https://x/jobs/1") # Should not raise
|
|
c.close()
|
|
|
|
|
|
class TestJobs:
|
|
def test_list_all(self) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, json=[{"id": 1}])
|
|
|
|
c = _client(_make_transport(handler))
|
|
jobs = c.jobs()
|
|
assert jobs == [{"id": 1}]
|
|
c.close()
|
|
|
|
def test_filter_by_status(self) -> None:
|
|
captured = {}
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
captured["url"] = str(req.url)
|
|
return httpx.Response(200, json=[])
|
|
|
|
c = _client(_make_transport(handler))
|
|
c.jobs(status="Completed")
|
|
assert "_status=Completed" in captured["url"]
|
|
c.close()
|
|
|
|
|
|
class TestAttributionStatus:
|
|
def test_returns_dict(self) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, json={"last_updated": "2025-01-01"})
|
|
|
|
c = _client(_make_transport(handler))
|
|
result = c.attribution_status()
|
|
assert result["last_updated"] == "2025-01-01"
|
|
c.close()
|
|
|
|
|
|
class TestMetadata:
|
|
def test_no_auth(self) -> None:
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
# Should NOT have auth header
|
|
assert "Authorization" not in req.headers
|
|
return httpx.Response(200, json={"fhirVersion": "4.0.1"})
|
|
|
|
c = _client(_make_transport(handler))
|
|
result = c.metadata()
|
|
assert result["fhirVersion"] == "4.0.1"
|
|
c.close()
|
|
|
|
|
|
# ── Parsing ──────────────────────────────────────────────────
|
|
|
|
|
|
class TestReadNdjson:
|
|
def test_reads_lines(self, tmp_path) -> None:
|
|
p = tmp_path / "test.ndjson"
|
|
p.write_text('{"id":"1"}\n{"id":"2"}\n')
|
|
result = Client.read_ndjson(p)
|
|
assert len(result) == 2
|
|
assert result[0]["id"] == "1"
|
|
|
|
def test_skips_blank_lines(self, tmp_path) -> None:
|
|
p = tmp_path / "test.ndjson"
|
|
p.write_text('{"id":"1"}\n\n{"id":"2"}\n\n')
|
|
result = Client.read_ndjson(p)
|
|
assert len(result) == 2
|
|
|
|
|
|
# ── Edge cases / defaults ───────────────────────────────────
|
|
|
|
|
|
class TestClientDefaults:
|
|
def test_defaults(self) -> None:
|
|
c = Client("cid", "csec")
|
|
assert c.base_url == SANDBOX
|
|
assert c.version == "v2"
|
|
assert c.max_retries == 3
|
|
from conf import path
|
|
|
|
assert c.output_dir == path("storage.bcda")
|
|
c.close()
|
|
|
|
def test_base_url_trailing_slash(self) -> None:
|
|
c = Client("cid", "csec", base_url="https://example.com/")
|
|
assert c.base_url == "https://example.com"
|
|
c.close()
|
|
|
|
|
|
class TestRequestEdgeCases:
|
|
@patch("time.sleep")
|
|
def test_429_exhausted_falls_through(self, mock_sleep) -> None:
|
|
"""All attempts return 429 → falls through to end-of-loop."""
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(
|
|
429,
|
|
headers={"Retry-After": "1"},
|
|
)
|
|
|
|
c = _client(_make_transport(handler), max_retries=2)
|
|
with pytest.raises(BcdaError, match="Request failed"):
|
|
c._request("GET", f"{SANDBOX}/test")
|
|
c.close()
|
|
|
|
@patch("time.sleep")
|
|
def test_connect_error_then_429_exhausted(self, mock_sleep) -> None:
|
|
"""ConnectError sets last_exc, then 429 exhausts retries."""
|
|
call_count = 0
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
nonlocal call_count
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
call_count += 1
|
|
if call_count == 1:
|
|
raise httpx.ConnectError("refused")
|
|
return httpx.Response(
|
|
429,
|
|
headers={"Retry-After": "1"},
|
|
)
|
|
|
|
c = _client(_make_transport(handler), max_retries=3)
|
|
with pytest.raises(BcdaError, match="refused"):
|
|
c._request("GET", f"{SANDBOX}/test")
|
|
c.close()
|
|
|
|
|
|
class TestPollEdgeCases:
|
|
@patch("time.sleep")
|
|
def test_poll_unexpected_status(self, mock_sleep) -> None:
|
|
"""Poll receives unexpected status code -> raise_for_status."""
|
|
call_count = 0
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
nonlocal call_count
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
call_count += 1
|
|
# Return 200 from _request perspective but an unusual
|
|
# status that poll doesn't expect. We need to return a
|
|
# status code that (a) passes _request checks and
|
|
# (b) is not 200 or 202.
|
|
# 204 No Content passes _request (2xx) but poll doesn't
|
|
# handle it.
|
|
return httpx.Response(204)
|
|
|
|
c = _client(_make_transport(handler))
|
|
# 204 is a success status, so raise_for_status won't raise.
|
|
# The poll loop should just call raise_for_status and return
|
|
# to the top, but since 204 is not 200 or 202, it'll
|
|
# call raise_for_status() which is a no-op for 2xx then
|
|
# continue the while True loop. That would infinite loop.
|
|
#
|
|
# Actually looking at the code, line 422 is
|
|
# resp.raise_for_status() and for 204 that's a no-op, then
|
|
# control falls off the while block to the next iteration.
|
|
# That'd infinite loop. But the test must terminate.
|
|
#
|
|
# The only way to trigger line 422 with an actual raise is
|
|
# a client error status (4xx) that _request doesn't handle.
|
|
# But _request handles all of those: 401 retries, 429 retries,
|
|
# 410 raises, and all others raise_for_status.
|
|
# So this line is actually unreachable in normal operation.
|
|
# For coverage, we need to mock _request to return a 4xx
|
|
# directly.
|
|
c.close()
|
|
|
|
|
|
class TestPollLine422:
|
|
def test_poll_with_mocked_request(self) -> None:
|
|
"""Cover the unreachable raise_for_status in poll."""
|
|
|
|
def handler(req: httpx.Request) -> httpx.Response:
|
|
if "/auth/token" in str(req.url):
|
|
return _token_response()
|
|
return httpx.Response(200, json={})
|
|
|
|
c = _client(_make_transport(handler))
|
|
# Monkey-patch _request to return a 400 response (which
|
|
# _request normally would not pass through).
|
|
call_count = 0
|
|
|
|
def patched_request(*args, **kwargs):
|
|
nonlocal call_count
|
|
call_count += 1
|
|
# Return a 400 response that poll doesn't handle.
|
|
return httpx.Response(400, request=httpx.Request("GET", "x"))
|
|
|
|
c._request = patched_request
|
|
with pytest.raises(httpx.HTTPStatusError):
|
|
c.poll("https://x/jobs/1")
|
|
c.close()
|