Files
stack/tests/zot/test_merge.py

245 lines
9.2 KiB
Python

"""Merge-based dedupe: fidelity facets union into the keeper."""
import json
from pathlib import Path
import pytest
from zot.db import TYPE_MAP, Db
from zot.schema import create_db
@pytest.fixture
def dup_db(tmp_path: Path) -> Path:
p = tmp_path / "zotero.sqlite"
create_db(str(p)).close()
with Db(str(p)) as db:
keeper = db.create_item(TYPE_MAP["document"], key="AAAAAAAA")
loser = db.create_item(TYPE_MAP["document"], key="BBBBBBBB")
for iid in (keeper, loser):
db.set_field(iid, "url", "https://example.org/x")
db.set_field(keeper, "title", "X")
db.set_field(loser, "title", "X (stale)")
db.sync_tags(keeper, ["shared", "keeper-only"])
db.sync_tags(loser, ["shared", "loser-only"])
# loser-only child note
nid = db.create_item(TYPE_MAP["note"], key="CCCCCCCC")
db.con.execute(
"INSERT INTO itemNotes (itemID, parentItemID, note, title) VALUES (?,?,?,?)",
(nid, loser, "<p>loser note</p>", ""),
)
# identical note on both — must NOT be doubled
for parent, key in ((keeper, "DDDDDDDD"), (loser, "EEEEEEEE")):
dn = db.create_item(TYPE_MAP["note"], key=key)
db.con.execute(
"INSERT INTO itemNotes (itemID, parentItemID, note, title) VALUES (?,?,?,?)",
(dn, parent, "<p>same on both</p>", ""),
)
# loser-only child attachment
att_loser_only = db.create_item(TYPE_MAP["attachment"], key="FFFFFFFF")
db.con.execute(
"INSERT INTO itemAttachments"
" (itemID, parentItemID, linkMode, contentType, path)"
" VALUES (?,?,?,?,?)",
(att_loser_only, loser, 0, "application/pdf", "loser-only.pdf"),
)
# identical attachment path on both — must NOT be doubled
for parent, key in ((keeper, "GGGGGGGG"), (loser, "HHHHHHHH")):
att = db.create_item(TYPE_MAP["attachment"], key=key)
db.con.execute(
"INSERT INTO itemAttachments"
" (itemID, parentItemID, linkMode, contentType, path)"
" VALUES (?,?,?,?,?)",
(att, parent, 0, "application/pdf", "same-on-both.pdf"),
)
# collections: both share one, loser is also in a second one
coll_shared = db.ensure_collection("Shared Collection")
coll_loser_only = db.ensure_collection("Loser Only Collection")
db.add_to_collection(keeper, collection_key=coll_shared)
db.add_to_collection(loser, collection_key=coll_shared)
db.add_to_collection(loser, collection_key=coll_loser_only)
# itemRelations: loser has a relation the keeper lacks
db.con.execute(
"INSERT INTO relationPredicates (predicate) VALUES (?)",
("dc:relation",),
)
pred_id = db.con.execute(
"SELECT predicateID FROM relationPredicates WHERE predicate=?",
("dc:relation",),
).fetchone()[0]
db.con.execute(
"INSERT INTO itemRelations (itemID, predicateID, object) VALUES (?,?,?)",
(loser, pred_id, "http://zotero.org/users/local/items/OLDKEY01"),
)
db.commit()
return p
def _tags(db: Db, item_id: int) -> set[str]:
return {
r[0]
for r in db.con.execute(
"SELECT t.name FROM itemTags it JOIN tags t ON t.tagID=it.tagID"
" WHERE it.itemID=?",
(item_id,),
)
}
def _notes(db: Db, item_id: int) -> list[str]:
return [
r[0]
for r in db.con.execute(
"SELECT note FROM itemNotes WHERE parentItemID=?", (item_id,)
)
]
def _attachment_paths(db: Db, item_id: int) -> list[str]:
return [
r[0]
for r in db.con.execute(
"SELECT path FROM itemAttachments WHERE parentItemID=?", (item_id,)
)
]
def _collection_names(db: Db, item_id: int) -> set[str]:
return {
r[0]
for r in db.con.execute(
"SELECT c.collectionName FROM collectionItems ci"
" JOIN collections c ON c.collectionID=ci.collectionID"
" WHERE ci.itemID=?",
(item_id,),
)
}
class TestMergeInto:
def test_unions_tags_and_adopts_missing_notes(self, dup_db):
from zot.merge import merge_into
with Db(str(dup_db)) as db:
keeper = db.find_item_by_key("AAAAAAAA")
loser = db.find_item_by_key("BBBBBBBB")
merge_into(db, keeper, loser)
db.commit()
assert _tags(db, keeper) >= {"shared", "keeper-only", "loser-only"}
notes = _notes(db, keeper)
assert "<p>loser note</p>" in notes
assert notes.count("<p>same on both</p>") == 1
assert db.find_item_by_key("BBBBBBBB") is None
def test_keeper_fields_win(self, dup_db):
from zot.merge import merge_into
with Db(str(dup_db)) as db:
keeper = db.find_item_by_key("AAAAAAAA")
loser = db.find_item_by_key("BBBBBBBB")
merge_into(db, keeper, loser)
row = db.con.execute(
"SELECT idv.value FROM itemData id"
" JOIN fields f ON f.fieldID=id.fieldID"
" JOIN itemDataValues idv ON idv.valueID=id.valueID"
" WHERE id.itemID=? AND f.fieldName='title'",
(keeper,),
).fetchone()
assert row[0] == "X"
def test_adopts_missing_attachments_and_dedups_by_path(self, dup_db):
from zot.merge import merge_into
with Db(str(dup_db)) as db:
keeper = db.find_item_by_key("AAAAAAAA")
loser = db.find_item_by_key("BBBBBBBB")
counts = merge_into(db, keeper, loser)
db.commit()
paths = _attachment_paths(db, keeper)
assert "loser-only.pdf" in paths
assert paths.count("same-on-both.pdf") == 1
assert counts["attachments_adopted"] == 1
def test_unions_collection_memberships(self, dup_db):
from zot.merge import merge_into
with Db(str(dup_db)) as db:
keeper = db.find_item_by_key("AAAAAAAA")
loser = db.find_item_by_key("BBBBBBBB")
counts = merge_into(db, keeper, loser)
db.commit()
assert _collection_names(db, keeper) == {
"Shared Collection",
"Loser Only Collection",
}
# "Shared Collection" already had keeper as a member — only
# the new one should count as added.
assert counts["collections_added"] == 1
def test_moves_relations_to_keeper(self, dup_db):
from zot.merge import merge_into
with Db(str(dup_db)) as db:
keeper = db.find_item_by_key("AAAAAAAA")
loser = db.find_item_by_key("BBBBBBBB")
counts = merge_into(db, keeper, loser)
db.commit()
objects = {
r[0]
for r in db.con.execute(
"SELECT object FROM itemRelations WHERE itemID=?", (keeper,)
)
}
assert "http://zotero.org/users/local/items/OLDKEY01" in objects
assert counts["relations_moved"] == 1
class TestDriver:
def test_dry_run_reports_without_deleting(self, dup_db, tmp_path):
from zot.merge import merge_url_duplicates
stats = merge_url_duplicates(dup_db, dry_run=True, log_dir=tmp_path)
assert stats["clusters"] == 1
with Db(str(dup_db)) as db:
assert db.find_item_by_key("BBBBBBBB") is not None
logs = list(tmp_path.glob("merge-log-*.json"))
assert logs and json.loads(logs[0].read_text())[0]["keeper_key"] == "AAAAAAAA"
def test_live_run_merges(self, dup_db, tmp_path):
from zot.merge import merge_url_duplicates
stats = merge_url_duplicates(dup_db, dry_run=False, log_dir=tmp_path)
assert stats["merged"] == 1
with Db(str(dup_db)) as db:
assert db.find_item_by_key("BBBBBBBB") is None
def test_type_mismatch_skipped(self, tmp_path):
from zot.merge import merge_url_duplicates
p = tmp_path / "z.sqlite"
create_db(str(p)).close()
with Db(str(p)) as db:
a = db.create_item(TYPE_MAP["document"], key="AAAAAAAA")
b = db.create_item(TYPE_MAP["journalArticle"], key="BBBBBBBB")
for iid in (a, b):
db.set_field(iid, "url", "https://example.org/y")
db.commit()
stats = merge_url_duplicates(p, dry_run=False, log_dir=tmp_path)
assert stats["skipped_type_mismatch"] == 1
with Db(str(p)) as db:
assert db.find_item_by_key("BBBBBBBB") is not None
def test_junk_urls_ignored(self, tmp_path):
from zot.merge import merge_url_duplicates
p = tmp_path / "z.sqlite"
create_db(str(p)).close()
with Db(str(p)) as db:
a = db.create_item(TYPE_MAP["journalArticle"], key="AAAAAAAA")
b = db.create_item(TYPE_MAP["journalArticle"], key="BBBBBBBB")
for iid in (a, b):
db.set_field(iid, "url", "997-998")
db.commit()
stats = merge_url_duplicates(p, dry_run=False, log_dir=tmp_path)
assert stats["clusters"] == 0