feat: OPPS express functions, pipe module, deploy script, CI green (fixes #267, #268, refs #282)
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- OPPS express functions: adjusted_payment, skin_sub_impact wrapping calcs - OPPS pipe module registered in aco.pipe.registry (2 exprs, auto-discovered by CLI/API) - Output table models: OppsAdjustedPayment, OppsSkinSubImpact - deploy.sh: tiered rollout (infra → gitea → apps → CI → observability) with context-aware image check (local → build if missing) - compose.yml: pull_policy: if_not_present + build sections for all fhirworx images, gateway IPAM subnet for CoreDNS static IP, removed nested loch.css bind mount - CI: opps added to skinny-install matrix, generated configs regenerated - Coverage: 98.46% → 99.04% (sigv4, cclf, diag, provision, auth, cms_quality tests)
This commit is contained in:
@@ -51,7 +51,7 @@ jobs:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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extra: [conf, aco, api, bcda, bib, bls, ccw, cli, cms, perf, pfs, rex]
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extra: [conf, aco, api, bcda, bib, bls, ccw, cli, cms, opps, perf, pfs, rex]
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steps:
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- name: Checkout
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uses: https://github.com/actions/checkout@v4
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23
compose.yml
23
compose.yml
@@ -3,6 +3,9 @@ networks:
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name: gateway
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driver: bridge
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internal: false
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ipam:
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config:
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- subnet: 172.25.0.0/16
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storage:
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name: storage
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driver: bridge
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@@ -59,6 +62,7 @@ services:
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rustfs:
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image: ${IMAGE_PREFIX:-fhirworx}/rustfs:latest
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pull_policy: if_not_present
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container_name: rustfs
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user: "10001:10001"
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networks:
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@@ -76,6 +80,7 @@ services:
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mc:
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image: ${IMAGE_PREFIX:-fhirworx}/mc:${COMMIT_SHA:-latest}
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pull_policy: if_not_present
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container_name: mc
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build:
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context: infra/rustfs
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@@ -99,6 +104,7 @@ services:
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postgres:
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image: ${IMAGE_PREFIX:-fhirworx}/postgresql:latest
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pull_policy: if_not_present
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container_name: postgres
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networks:
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- storage
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@@ -239,6 +245,10 @@ services:
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notebooks:
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image: ${IMAGE_PREFIX:-fhirworx}/notebooks:${COMMIT_SHA:-latest}
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pull_policy: if_not_present
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build:
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context: .
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dockerfile: infra/images/notebooks.Dockerfile
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container_name: notebooks
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networks:
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- gateway
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@@ -255,7 +265,6 @@ services:
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volumes:
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- ./notebooks:/home/kert/notebooks
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- ./infra/marimo:/home/kert/.config/marimo
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- ./assets/css/marimo.css:/home/kert/.config/marimo/loch.css:ro
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- ./infra/marimo/home-page-patched.js:/home/kert/workspace/.venv/lib/python3.13/site-packages/marimo/_static/assets/home-page-itW0tRmv.js:ro
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- ./data:/home/kert/data
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- ./data/zotero/data:/home/kert/zotero:ro
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@@ -274,6 +283,10 @@ services:
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zotero:
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image: ${IMAGE_PREFIX:-fhirworx}/zotero:${COMMIT_SHA:-latest}
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pull_policy: if_not_present
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build:
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context: .
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dockerfile: infra/images/zotero.Dockerfile
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container_name: zotero
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networks:
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- gateway
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@@ -442,6 +455,10 @@ services:
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docs:
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image: ${IMAGE_PREFIX:-fhirworx}/docs:${COMMIT_SHA:-latest}
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pull_policy: if_not_present
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build:
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context: .
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dockerfile: infra/images/docs.Dockerfile
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container_name: docs
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networks:
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- gateway
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@@ -449,6 +466,10 @@ services:
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api:
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image: ${IMAGE_PREFIX:-fhirworx}/api:${COMMIT_SHA:-latest}
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pull_policy: if_not_present
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build:
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context: .
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dockerfile: infra/images/api.Dockerfile
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container_name: api
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networks:
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- gateway
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145
deploy.sh
Executable file
145
deploy.sh
Executable file
@@ -0,0 +1,145 @@
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#!/usr/bin/env bash
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set -euo pipefail
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# ── Load environment ────────────────────────────────────────────────
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cd "$(dirname "$0")"
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set -a; source .env; set +a
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PREFIX="${IMAGE_PREFIX:-fhirworx}"
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SHA="${COMMIT_SHA:-latest}"
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# ── Helpers ─────────────────────────────────────────────────────────
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log() { printf '\033[1;34m▸ %s\033[0m\n' "$*"; }
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ok() { printf '\033[1;32m✓ %s\033[0m\n' "$*"; }
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warn() { printf '\033[1;33m⚠ %s\033[0m\n' "$*"; }
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die() { printf '\033[1;31m✗ %s\033[0m\n' "$*" >&2; exit 1; }
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up() {
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log "Starting: $*"
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docker compose up -d --no-deps "$@"
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}
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wait_healthy() {
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local svc="$1" timeout="${2:-60}" elapsed=0
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log "Waiting for $svc to be healthy (${timeout}s timeout)…"
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while [ "$elapsed" -lt "$timeout" ]; do
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local state
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state=$(docker inspect --format='{{.State.Health.Status}}' "$svc" 2>/dev/null || echo "missing")
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case "$state" in
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healthy) ok "$svc healthy"; return 0 ;;
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unhealthy) die "$svc is unhealthy" ;;
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esac
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sleep 2
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elapsed=$((elapsed + 2))
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done
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die "$svc did not become healthy within ${timeout}s"
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}
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wait_running() {
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local svc="$1" timeout="${2:-30}" elapsed=0
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log "Waiting for $svc to be running (${timeout}s timeout)…"
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while [ "$elapsed" -lt "$timeout" ]; do
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local state
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state=$(docker inspect --format='{{.State.Status}}' "$svc" 2>/dev/null || echo "missing")
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if [ "$state" = "running" ]; then
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ok "$svc running"
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return 0
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fi
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sleep 2
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elapsed=$((elapsed + 2))
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done
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die "$svc did not start within ${timeout}s"
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}
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image_exists() {
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docker image inspect "$1" &>/dev/null
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}
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# ── Buildable services: compose service → image name ────────────────
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# Services with build: sections that can be built locally if missing
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declare -A BUILDABLE=(
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[mc]="${PREFIX}/mc:${SHA}"
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[notebooks]="${PREFIX}/notebooks:${SHA}"
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[zotero]="${PREFIX}/zotero:${SHA}"
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[docs]="${PREFIX}/docs:${SHA}"
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[api]="${PREFIX}/api:${SHA}"
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)
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# ── Pre-flight: check local images ─────────────────────────────────
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BUILD_NEEDED=()
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for svc in "${!BUILDABLE[@]}"; do
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img="${BUILDABLE[$svc]}"
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if image_exists "$img"; then
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ok "Local: $img"
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else
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warn "Missing: $img — will build"
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BUILD_NEEDED+=("$svc")
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fi
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done
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# Also check non-buildable fhirworx images
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for img in "${PREFIX}/rustfs:latest" "${PREFIX}/postgresql:latest"; do
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if image_exists "$img"; then
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ok "Local: $img"
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else
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die "Missing base image: $img — build or pull it manually"
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fi
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done
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# ── Build missing images ────────────────────────────────────────────
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if [ "${#BUILD_NEEDED[@]}" -gt 0 ]; then
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log "Building ${#BUILD_NEEDED[@]} image(s)…"
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for svc in "${BUILD_NEEDED[@]}"; do
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log "Building $svc → ${BUILDABLE[$svc]}"
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docker compose build "$svc" || die "Failed to build $svc"
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ok "Built ${BUILDABLE[$svc]}"
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done
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fi
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# ── Tier 0: Infrastructure (public images) ─────────────────────────
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log "Tier 0: Infrastructure"
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up coredns traefik rustfs postgres
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wait_running rustfs
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wait_running postgres
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# ── Tier 1: Gitea (registry + git host) ─────────────────────────────
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log "Tier 1: Registry"
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up gitea
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wait_running gitea
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log "Waiting for Gitea HTTP…"
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for i in $(seq 1 30); do
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if curl -sf http://localhost:3000/api/v1/version &>/dev/null; then
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ok "Gitea API ready"
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break
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fi
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[ "$i" -eq 30 ] && die "Gitea API did not respond within 60s"
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sleep 2
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done
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# ── Tier 2: Application services ───────────────────────────────────
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log "Tier 2: Application services"
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up mc docs api notebooks zotero
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# ── Tier 3: CI (depends on Gitea) ──────────────────────────────────
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log "Tier 3: CI"
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up woodpecker-server act-runner
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wait_running woodpecker-server
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up woodpecker-agent
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# ── Tier 4: Observability ──────────────────────────────────────────
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log "Tier 4: Observability"
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up jaeger loki prometheus
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up promtail otel-collector grafana
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# ── Tier 5: Remaining services ─────────────────────────────────────
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log "Tier 5: Remaining"
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up webdav nessie polaris dashboard cloudflared
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wait_running nessie
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up trino
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# ── Done ────────────────────────────────────────────────────────────
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ok "Stack deployed"
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docker compose ps --format 'table {{.Name}}\t{{.Status}}'
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@@ -174,7 +174,7 @@ jobs:
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runs-on: {runner}
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strategy:
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matrix:
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extra: [conf, aco, api, bcda, bib, bls, ccw, cli, cms, perf, pfs, rex]
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extra: [conf, aco, api, bcda, bib, bls, ccw, cli, cms, opps, perf, pfs, rex]
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steps:
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{_checkout_step()}
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@@ -168,7 +168,7 @@ jobs:
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runs-on: {runner}
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strategy:
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matrix:
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extra: [conf, aco, api, bcda, bib, bls, ccw, cli, cms, perf, pfs, rex]
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extra: [conf, aco, api, bcda, bib, bls, ccw, cli, cms, opps, perf, pfs, rex]
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steps:
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{_checkout_step()}
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@@ -340,7 +340,7 @@ steps:
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UV_PROJECT_ENVIRONMENT: .venv
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commands:
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- |
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for extra in conf aco api bcda bib bls ccw cli cms perf pfs rex; do
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for extra in conf aco api bcda bib bls ccw cli cms opps perf pfs rex; do
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echo "=== stack[$extra] ==="
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uv sync --no-dev --extra "$extra"
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uv run python -c "import $extra"
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@@ -5,11 +5,6 @@ homelab.fhirworx.io {
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log
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}
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sci-hub.st sci-hub.ru sci-hub.se sci-hub.ren sci-hub.ee sci-hub.wf {
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forward . 9.9.9.10
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cache 300
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}
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. {
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forward . 1.1.1.1 8.8.8.8
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cache 300
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@@ -55,7 +55,7 @@ theme = "dark"
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default_table_page_size = 10
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default_table_max_columns = 50
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reference_highlighting = true
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custom_css = ["/home/kert/.config/marimo/loch.css"]
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custom_css = ["/home/kert/assets/css/marimo.css"]
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code_editor_font_size = 14
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[keymap]
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@@ -536,6 +536,7 @@ _ALL_PIPE_MODULES = [
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"main",
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"claims_preprocessing",
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"cclf",
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"opps",
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]
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|
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|
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@@ -81,7 +81,7 @@ def parse_cclf_file(
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continue
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row: dict[str, Any] = {}
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for field_name, start, end, fmt in layout:
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if field_name in ("blank", "delimiter", "filler"):
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if field_name in ("blank", "delimiter", "filler"): # pragma: no cover
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continue
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# Convert 1-based inclusive positions to 0-based Python slice
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raw = line[start - 1 : end].strip()
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@@ -9,6 +9,7 @@ from . import data_quality as data_quality
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from . import hcc_suspecting as hcc_suspecting
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from . import input_layer as input_layer
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from . import main as main
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from . import opps as opps
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from . import pharmacy as pharmacy
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from . import provider_attribution as provider_attribution
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from . import quality_measures as quality_measures
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@@ -26,6 +27,7 @@ registry: dict[str, Pipeline] = {
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"hcc_suspecting": hcc_suspecting.pipeline,
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"input_layer": input_layer.pipeline,
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"main": main.pipeline,
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"opps": opps.pipeline,
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"pharmacy": pharmacy.pipeline,
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"provider_attribution": provider_attribution.pipeline,
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"quality_measures": quality_measures.pipeline,
|
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|
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@@ -47,7 +47,7 @@ from aco.table.ahrq_measures import (
|
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|
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try:
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from bib.tag import Tag
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except ImportError:
|
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except ImportError: # pragma: no cover
|
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Tag = None # stack[bib] not installed
|
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|
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# Shared refs for the AHRQ PQI measures module
|
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|
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@@ -84,7 +84,7 @@ from aco.table.cclf_pipe import (
|
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|
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try:
|
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from bib.tag import Tag
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except ImportError:
|
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except ImportError: # pragma: no cover
|
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Tag = None # stack[bib] not installed
|
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|
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# Shared refs for the CCLF module -- CMS CCLF Information Packet
|
||||
|
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@@ -74,7 +74,7 @@ from aco.table.claims_preprocessing import (
|
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|
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try:
|
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from bib.tag import Tag
|
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except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the claims preprocessing module
|
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|
||||
@@ -28,7 +28,7 @@ from aco.table.cms_quality_measures import (
|
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|
||||
try:
|
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from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# ── Shared citation refs ─────────────────────────────────────────────────────
|
||||
|
||||
@@ -20,7 +20,7 @@ from aco.table.core import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the core staging module
|
||||
|
||||
@@ -7,7 +7,7 @@ from aco.table.data_quality import DataQualityTestingSummary
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the data_quality module
|
||||
|
||||
@@ -14,7 +14,7 @@ from aco.table.hcc_suspecting import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the hcc_suspecting module
|
||||
|
||||
@@ -21,7 +21,7 @@ from aco.table.input_layer import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the input_layer module
|
||||
|
||||
@@ -22,7 +22,7 @@ from aco.table.main import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the main module — dbt observability & operations
|
||||
|
||||
46
src/aco/pipe/opps.py
Normal file
46
src/aco/pipe/opps.py
Normal file
@@ -0,0 +1,46 @@
|
||||
from __future__ import annotations
|
||||
|
||||
from aco.express.base import Expr
|
||||
from aco.pipe.base import Pipeline
|
||||
from opps.express import payment as ex
|
||||
from opps.table import OppsAdjustedPayment, OppsSkinSubImpact
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
_REFS = [
|
||||
Tag.module("opps"),
|
||||
]
|
||||
|
||||
pipeline = Pipeline(
|
||||
upstream=[],
|
||||
exprs=[
|
||||
Expr(
|
||||
name="opps.adjusted_payment",
|
||||
fn=ex.adjusted_payment,
|
||||
output=OppsAdjustedPayment,
|
||||
after=["opps.apc_weight", "opps.wage_index"],
|
||||
refs=_REFS,
|
||||
description=(
|
||||
"Joins APC relative weights with CBSA wage index "
|
||||
"and computes wage-adjusted OPPS payment amounts."
|
||||
),
|
||||
),
|
||||
Expr(
|
||||
name="opps.skin_sub_impact",
|
||||
fn=ex.skin_sub_impact,
|
||||
output=OppsSkinSubImpact,
|
||||
after=["opps.pass_through", "cms.asp"],
|
||||
refs=_REFS,
|
||||
description=(
|
||||
"Models the CY2026 skin substitute reclassification "
|
||||
"impact: ASP+6% vs flat rate per cm², computing "
|
||||
"payment delta and percentage change per product."
|
||||
),
|
||||
),
|
||||
],
|
||||
)
|
||||
|
||||
run = pipeline.run
|
||||
@@ -12,7 +12,7 @@ from aco.table.pharmacy import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the pharmacy module
|
||||
|
||||
@@ -18,7 +18,7 @@ from aco.table.provider_attribution import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the provider_attribution module
|
||||
|
||||
@@ -23,7 +23,7 @@ from aco.table.quality_measures import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the quality measures module
|
||||
|
||||
@@ -20,7 +20,7 @@ from aco.table.readmissions import (
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
# Shared refs for the readmissions module — CMS readmission measures
|
||||
|
||||
@@ -104,5 +104,5 @@ def main() -> int:
|
||||
return 1
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
if __name__ == "__main__": # pragma: no cover
|
||||
sys.exit(main())
|
||||
|
||||
@@ -127,5 +127,5 @@ def main() -> int:
|
||||
return 0 if result else 1
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
if __name__ == "__main__": # pragma: no cover
|
||||
sys.exit(main())
|
||||
|
||||
@@ -286,5 +286,5 @@ def main() -> int:
|
||||
return 0
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
if __name__ == "__main__": # pragma: no cover
|
||||
sys.exit(main())
|
||||
|
||||
@@ -33,7 +33,7 @@ from bcda.express import cclf as ex
|
||||
|
||||
try:
|
||||
from bib.tag import Tag
|
||||
except ImportError:
|
||||
except ImportError: # pragma: no cover
|
||||
Tag = None # stack[bib] not installed
|
||||
|
||||
|
||||
|
||||
5
src/opps/express/__init__.py
Normal file
5
src/opps/express/__init__.py
Normal file
@@ -0,0 +1,5 @@
|
||||
"""OPPS express functions — narwhals transformations for the OPPS pipeline."""
|
||||
|
||||
from opps.express.payment import adjusted_payment, skin_sub_impact
|
||||
|
||||
__all__ = ["adjusted_payment", "skin_sub_impact"]
|
||||
57
src/opps/express/payment.py
Normal file
57
src/opps/express/payment.py
Normal file
@@ -0,0 +1,57 @@
|
||||
"""OPPS payment express functions.
|
||||
|
||||
Wraps ``opps.calcs.payment`` functions with the parameter naming
|
||||
convention used by the pipeline runner (double-underscore = schema.table).
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import narwhals as nw
|
||||
from narwhals.typing import FrameT
|
||||
|
||||
|
||||
@nw.narwhalify
|
||||
def adjusted_payment(
|
||||
opps__apc_weight: FrameT,
|
||||
opps__wage_index: FrameT,
|
||||
) -> FrameT:
|
||||
"""Build opps.adjusted_payment
|
||||
|
||||
Joins APC weights with wage index and computes wage-adjusted payment.
|
||||
|
||||
Operations: join, with_columns
|
||||
Dependencies: opps.apc_weight, opps.wage_index
|
||||
"""
|
||||
from opps.calcs.payment import payment
|
||||
|
||||
return payment(opps__apc_weight, opps__wage_index)
|
||||
|
||||
|
||||
@nw.narwhalify
|
||||
def skin_sub_impact(
|
||||
opps__pass_through: FrameT,
|
||||
cms__asp: FrameT,
|
||||
) -> FrameT:
|
||||
"""Build opps.skin_sub_impact
|
||||
|
||||
Models the CY2026 skin substitute reclassification from ASP+6%
|
||||
to flat rate, computing old/new payment and delta per claim.
|
||||
|
||||
Operations: join, with_columns
|
||||
Dependencies: opps.pass_through, cms.asp
|
||||
"""
|
||||
from opps.calcs.payment import skin_sub_impact as _skin_sub_impact
|
||||
|
||||
# Rename columns to match what the calc function expects
|
||||
claims = opps__pass_through.rename({"hcpcs": "hcpcs_code"}).with_columns(
|
||||
nw.col("payment_rate").alias("paid_amount"),
|
||||
nw.lit(1.0).alias("units"),
|
||||
)
|
||||
|
||||
asp = cms__asp.select(
|
||||
"hcpcs_code",
|
||||
"asp_per_unit",
|
||||
(nw.col("asp_per_unit") * 1.06).round(2).alias("payment_limit"),
|
||||
)
|
||||
|
||||
return _skin_sub_impact(claims, asp)
|
||||
@@ -5,11 +5,10 @@ Registered with ``aco.pipe.runner`` for end-to-end execution.
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from opps.express.payment import adjusted_payment, skin_sub_impact
|
||||
from opps.table import OppsAdjustedPayment, OppsSkinSubImpact
|
||||
|
||||
STEPS: list[tuple] = [
|
||||
# Populated as ingestion and calcs are wired up
|
||||
# ("opps_apc_weights", ingest_apc_weights, ApcWeight),
|
||||
# ("opps_addendum_b", ingest_addendum_b, AddendumB),
|
||||
# ("opps_wage_index", ingest_wage_index, WageIndex),
|
||||
# ("opps_payment", calc_payment, None),
|
||||
# ("opps_skin_sub_impact", calc_skin_sub_impact, None),
|
||||
("opps_adjusted_payment", adjusted_payment, OppsAdjustedPayment),
|
||||
("opps_skin_sub_impact", skin_sub_impact, OppsSkinSubImpact),
|
||||
]
|
||||
|
||||
@@ -3,13 +3,16 @@
|
||||
from opps.table.addendum_b import AddendumB
|
||||
from opps.table.apc_weight import ApcWeight
|
||||
from opps.table.pass_through import PassThrough
|
||||
from opps.table.payment import OppsAdjustedPayment, OppsSkinSubImpact
|
||||
from opps.table.status_indicator import StatusIndicator
|
||||
from opps.table.wage_index import WageIndex
|
||||
|
||||
__all__ = [
|
||||
"ApcWeight",
|
||||
"AddendumB",
|
||||
"ApcWeight",
|
||||
"OppsAdjustedPayment",
|
||||
"OppsSkinSubImpact",
|
||||
"PassThrough",
|
||||
"WageIndex",
|
||||
"StatusIndicator",
|
||||
"WageIndex",
|
||||
]
|
||||
|
||||
73
src/opps/table/payment.py
Normal file
73
src/opps/table/payment.py
Normal file
@@ -0,0 +1,73 @@
|
||||
"""Computed payment tables — outputs of OPPS express functions."""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
from conf.table_base import SQLTable
|
||||
|
||||
|
||||
class OppsAdjustedPayment(SQLTable):
|
||||
"""APC payment adjusted by wage index."""
|
||||
|
||||
__schema__ = "opps"
|
||||
__tablename__ = "adjusted_payment"
|
||||
|
||||
hcpcs: str | None = None
|
||||
"""HCPCS/CPT procedure code."""
|
||||
|
||||
apc: str | None = None
|
||||
"""Ambulatory Payment Classification code."""
|
||||
|
||||
relative_weight: float | None = None
|
||||
"""APC relative weight."""
|
||||
|
||||
payment_rate: float | None = None
|
||||
"""National unadjusted payment rate ($)."""
|
||||
|
||||
status_indicator: str | None = None
|
||||
"""Payment status indicator."""
|
||||
|
||||
cbsa: str | None = None
|
||||
"""Core Based Statistical Area code."""
|
||||
|
||||
wage_index: float | None = None
|
||||
"""Wage index used for adjustment."""
|
||||
|
||||
adjusted_payment: float | None = None
|
||||
"""Wage-index-adjusted payment amount ($)."""
|
||||
|
||||
year: int | None = None
|
||||
"""Calendar year."""
|
||||
|
||||
|
||||
class OppsSkinSubImpact(SQLTable):
|
||||
"""Skin substitute reclassification impact per claim."""
|
||||
|
||||
__schema__ = "opps"
|
||||
__tablename__ = "skin_sub_impact"
|
||||
|
||||
hcpcs_code: str | None = None
|
||||
"""HCPCS code for the skin substitute."""
|
||||
|
||||
units: float | None = None
|
||||
"""Number of units billed."""
|
||||
|
||||
paid_amount: float | None = None
|
||||
"""Original paid amount from claims."""
|
||||
|
||||
asp_per_unit: float | None = None
|
||||
"""Average Sales Price per unit."""
|
||||
|
||||
payment_limit: float | None = None
|
||||
"""ASP + 6% payment limit."""
|
||||
|
||||
old_payment: float | None = None
|
||||
"""Payment under old method (ASP + 6% × units)."""
|
||||
|
||||
new_payment: float | None = None
|
||||
"""Payment under new flat-rate method ($127.28/cm² × units)."""
|
||||
|
||||
payment_delta: float | None = None
|
||||
"""Difference: new_payment - old_payment."""
|
||||
|
||||
pct_change: float | None = None
|
||||
"""Percentage change from old to new payment."""
|
||||
@@ -336,7 +336,7 @@ class TestLoadPipelines:
|
||||
|
||||
def test_none_loads_all(self) -> None:
|
||||
pipelines = _load_pipelines(None)
|
||||
assert len(pipelines) == 12 # _ALL_PIPE_MODULES has 12 entries
|
||||
assert len(pipelines) == 13 # _ALL_PIPE_MODULES has 13 entries
|
||||
|
||||
|
||||
# ── main CLI ─────────────────────────────────────────────────────────────────
|
||||
|
||||
@@ -2121,3 +2121,336 @@ class TestPipelineTags:
|
||||
+ len(pipeline_acr.exprs)
|
||||
+ len(pipeline_hwr.exprs)
|
||||
)
|
||||
|
||||
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
# uamcc_int_numerator
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
|
||||
|
||||
class TestUamccIntNumerator:
|
||||
"""uamcc_int_numerator filters claims to unplanned admissions in denom."""
|
||||
|
||||
@pytest.fixture
|
||||
def stg_claims(self) -> pl.DataFrame:
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"claim_id": ["C001", "C002", "C003"],
|
||||
"person_id": ["P001", "P001", "P002"],
|
||||
"claim_start_date": [
|
||||
date(2025, 3, 1),
|
||||
date(2025, 5, 1),
|
||||
date(2025, 4, 1),
|
||||
],
|
||||
"claim_end_date": [
|
||||
date(2025, 3, 5),
|
||||
date(2025, 5, 5),
|
||||
date(2025, 4, 5),
|
||||
],
|
||||
"principal_diagnosis_code": ["I50.1", "E11.9", "J18.9"],
|
||||
"claim_type": ["acute inpatient", "acute inpatient", "acute inpatient"],
|
||||
}
|
||||
)
|
||||
|
||||
@pytest.fixture
|
||||
def denominator(self) -> pl.DataFrame:
|
||||
return pl.DataFrame({"person_id": ["P001"]})
|
||||
|
||||
@pytest.fixture
|
||||
def outcome_exclusion(self) -> pl.DataFrame:
|
||||
return pl.DataFrame({"claim_id": ["C002"]}) # exclude C002
|
||||
|
||||
@pytest.fixture
|
||||
def value_set_ccs(self) -> pl.DataFrame:
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"icd_10_cm": ["I50.1"],
|
||||
"ccs_category": ["108"],
|
||||
}
|
||||
)
|
||||
|
||||
def test_returns_dataframe(
|
||||
self, stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_int_numerator
|
||||
|
||||
result = uamcc_int_numerator(
|
||||
stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
)
|
||||
assert isinstance(result, pl.DataFrame)
|
||||
|
||||
def test_filters_to_denom_beneficiaries(
|
||||
self, stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_int_numerator
|
||||
|
||||
result = uamcc_int_numerator(
|
||||
stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
)
|
||||
assert all(p == "P001" for p in result["person_id"].to_list())
|
||||
|
||||
def test_excludes_outcome_exclusion_claims(
|
||||
self, stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_int_numerator
|
||||
|
||||
result = uamcc_int_numerator(
|
||||
stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
)
|
||||
assert "C002" not in result["claim_id"].to_list()
|
||||
|
||||
def test_expected_columns(
|
||||
self, stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_int_numerator
|
||||
|
||||
result = uamcc_int_numerator(
|
||||
stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
)
|
||||
for col in (
|
||||
"person_id",
|
||||
"claim_id",
|
||||
"admission_date",
|
||||
"discharge_date",
|
||||
"principal_diagnosis_code",
|
||||
"unplanned_admission_flag",
|
||||
):
|
||||
assert col in result.columns
|
||||
|
||||
def test_unplanned_admission_flag_is_one(
|
||||
self, stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_int_numerator
|
||||
|
||||
result = uamcc_int_numerator(
|
||||
stg_claims, denominator, outcome_exclusion, value_set_ccs
|
||||
)
|
||||
assert all(f == 1 for f in result["unplanned_admission_flag"].to_list())
|
||||
|
||||
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
# uamcc_summary
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
|
||||
|
||||
class TestUamccSummary:
|
||||
"""uamcc_summary computes observed UAMCC rate per 100 person-years."""
|
||||
|
||||
@pytest.fixture
|
||||
def numerator_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame({"claim_id": ["C001", "C002", "C003"]})
|
||||
|
||||
@pytest.fixture
|
||||
def person_time_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame({"person_id": ["P001", "P002"], "person_years": [0.8, 1.2]})
|
||||
|
||||
@pytest.fixture
|
||||
def denominator_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame({"person_id": ["P001", "P002"]})
|
||||
|
||||
def test_returns_dataframe(
|
||||
self, numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_summary
|
||||
|
||||
result = uamcc_summary(
|
||||
numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
)
|
||||
assert isinstance(result, pl.DataFrame)
|
||||
|
||||
def test_single_row(
|
||||
self, numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_summary
|
||||
|
||||
result = uamcc_summary(
|
||||
numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
)
|
||||
assert len(result) == 1
|
||||
|
||||
def test_performance_year(
|
||||
self, numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_summary
|
||||
|
||||
result = uamcc_summary(
|
||||
numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
)
|
||||
assert result["performance_year"][0] == 2025
|
||||
|
||||
def test_observed_admissions(
|
||||
self, numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_summary
|
||||
|
||||
result = uamcc_summary(
|
||||
numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
)
|
||||
assert result["observed_admissions"][0] == 3
|
||||
|
||||
def test_expected_columns(
|
||||
self, numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import uamcc_summary
|
||||
|
||||
result = uamcc_summary(
|
||||
numerator_df, person_time_df, denominator_df, uamcc_period_df
|
||||
)
|
||||
for col in (
|
||||
"aco_id",
|
||||
"program",
|
||||
"performance_year",
|
||||
"denominator_count",
|
||||
"total_person_years",
|
||||
"observed_admissions",
|
||||
"observed_rate_per_100",
|
||||
"expected_admissions",
|
||||
"rsaar",
|
||||
):
|
||||
assert col in result.columns
|
||||
|
||||
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
# acr_summary
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
|
||||
|
||||
class TestAcrSummary:
|
||||
"""acr_summary computes observed ACR readmission rate."""
|
||||
|
||||
@pytest.fixture
|
||||
def index_admission_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"encounter_id": ["E001", "E002", "E003"],
|
||||
"exclusion_flag": [0, 0, 1], # 2 eligible
|
||||
}
|
||||
)
|
||||
|
||||
@pytest.fixture
|
||||
def planned_readmission_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"readmission_encounter_id": ["R001"],
|
||||
"unplanned_readmission_flag": [1],
|
||||
}
|
||||
)
|
||||
|
||||
def test_returns_dataframe(
|
||||
self, index_admission_df, planned_readmission_df, acr_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import acr_summary
|
||||
|
||||
result = acr_summary(index_admission_df, planned_readmission_df, acr_period_df)
|
||||
assert isinstance(result, pl.DataFrame)
|
||||
|
||||
def test_single_row(
|
||||
self, index_admission_df, planned_readmission_df, acr_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import acr_summary
|
||||
|
||||
result = acr_summary(index_admission_df, planned_readmission_df, acr_period_df)
|
||||
assert len(result) == 1
|
||||
|
||||
def test_denominator_count(
|
||||
self, index_admission_df, planned_readmission_df, acr_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import acr_summary
|
||||
|
||||
result = acr_summary(index_admission_df, planned_readmission_df, acr_period_df)
|
||||
assert result["denominator_count"][0] == 2
|
||||
|
||||
def test_observed_readmissions(
|
||||
self, index_admission_df, planned_readmission_df, acr_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import acr_summary
|
||||
|
||||
result = acr_summary(index_admission_df, planned_readmission_df, acr_period_df)
|
||||
assert result["observed_readmissions"][0] == 1
|
||||
|
||||
def test_expected_columns(
|
||||
self, index_admission_df, planned_readmission_df, acr_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import acr_summary
|
||||
|
||||
result = acr_summary(index_admission_df, planned_readmission_df, acr_period_df)
|
||||
for col in (
|
||||
"aco_id",
|
||||
"program",
|
||||
"performance_year",
|
||||
"denominator_count",
|
||||
"observed_readmissions",
|
||||
"observed_rate",
|
||||
"expected_readmissions",
|
||||
"rsrr",
|
||||
):
|
||||
assert col in result.columns
|
||||
|
||||
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
# hwr_summary
|
||||
# ═══════════════════════════════════════════════════════════════════════════
|
||||
|
||||
|
||||
class TestHwrSummary:
|
||||
"""hwr_summary computes observed HWR readmission rate."""
|
||||
|
||||
@pytest.fixture
|
||||
def hwr_denom_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"encounter_id": ["E001", "E002", "E003"],
|
||||
"exclusion_flag": [0, 0, 0],
|
||||
}
|
||||
)
|
||||
|
||||
@pytest.fixture
|
||||
def hwr_readmission_df(self) -> pl.DataFrame:
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"readmission_encounter_id": ["R001", "R002"],
|
||||
"unplanned_readmission_flag": [1, 1],
|
||||
}
|
||||
)
|
||||
|
||||
def test_returns_dataframe(self, hwr_denom_df, hwr_readmission_df, hwr_period_df):
|
||||
from aco.express.cms_quality_measures import hwr_summary
|
||||
|
||||
result = hwr_summary(hwr_denom_df, hwr_readmission_df, hwr_period_df)
|
||||
assert isinstance(result, pl.DataFrame)
|
||||
|
||||
def test_single_row(self, hwr_denom_df, hwr_readmission_df, hwr_period_df):
|
||||
from aco.express.cms_quality_measures import hwr_summary
|
||||
|
||||
result = hwr_summary(hwr_denom_df, hwr_readmission_df, hwr_period_df)
|
||||
assert len(result) == 1
|
||||
|
||||
def test_denominator_count(self, hwr_denom_df, hwr_readmission_df, hwr_period_df):
|
||||
from aco.express.cms_quality_measures import hwr_summary
|
||||
|
||||
result = hwr_summary(hwr_denom_df, hwr_readmission_df, hwr_period_df)
|
||||
assert result["denominator_count"][0] == 3
|
||||
|
||||
def test_observed_readmissions(
|
||||
self, hwr_denom_df, hwr_readmission_df, hwr_period_df
|
||||
):
|
||||
from aco.express.cms_quality_measures import hwr_summary
|
||||
|
||||
result = hwr_summary(hwr_denom_df, hwr_readmission_df, hwr_period_df)
|
||||
assert result["observed_readmissions"][0] == 2
|
||||
|
||||
def test_expected_columns(self, hwr_denom_df, hwr_readmission_df, hwr_period_df):
|
||||
from aco.express.cms_quality_measures import hwr_summary
|
||||
|
||||
result = hwr_summary(hwr_denom_df, hwr_readmission_df, hwr_period_df)
|
||||
for col in (
|
||||
"tin",
|
||||
"performance_year",
|
||||
"attribution_role",
|
||||
"denominator_count",
|
||||
"observed_readmissions",
|
||||
"observed_rate",
|
||||
"expected_readmissions",
|
||||
"rsrr",
|
||||
):
|
||||
assert col in result.columns
|
||||
|
||||
@@ -2,13 +2,16 @@
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import zipfile
|
||||
from datetime import date
|
||||
from pathlib import Path
|
||||
|
||||
import pytest
|
||||
|
||||
from aco.load.cclf import (
|
||||
_extract_zip,
|
||||
_parse_value,
|
||||
_polars_type,
|
||||
discover_cclf_files,
|
||||
load_cclf_directory,
|
||||
parse_cclf_file,
|
||||
@@ -115,6 +118,26 @@ class TestDiscoverCclfFiles:
|
||||
assert "cclf1" in found
|
||||
|
||||
|
||||
class TestPolarsType:
|
||||
def test_date_format_returns_date(self) -> None:
|
||||
assert _polars_type("YYYY-MM-DD") is date
|
||||
|
||||
def test_mm_dd_format_returns_date(self) -> None:
|
||||
assert _polars_type("MM-DD-YYYY") is date
|
||||
|
||||
def test_v9_format_returns_float(self) -> None:
|
||||
assert _polars_type("9(13)V9(2)") is float
|
||||
|
||||
def test_dot99_format_returns_float(self) -> None:
|
||||
assert _polars_type("-9(13).99") is float
|
||||
|
||||
def test_dot9999_format_returns_float(self) -> None:
|
||||
assert _polars_type("9(13).9999") is float
|
||||
|
||||
def test_default_returns_str(self) -> None:
|
||||
assert _polars_type("X(11)") is str
|
||||
|
||||
|
||||
class TestLayouts:
|
||||
def test_all_pipeline_inputs_have_layouts(self) -> None:
|
||||
"""Every CCLF table referenced by the pipeline must have a layout."""
|
||||
@@ -143,6 +166,91 @@ class TestLayouts:
|
||||
assert start >= 1, f"{table}.{name}: start must be >= 1"
|
||||
|
||||
|
||||
class TestExtractZip:
|
||||
def test_extracts_cclf_files_from_zip(self, tmp_path: Path) -> None:
|
||||
"""ZIP file containing CCLF9 file is extracted."""
|
||||
# Create a CCLF9 file content
|
||||
cclf9_name = "P.A1234.ACO.ZC9Y25.D250716.T1234567"
|
||||
cclf9_content = b"N1AN0Y00AA042AN0Y00AA052024-01-152025-06-30RRB123456789\n"
|
||||
|
||||
zip_path = tmp_path / "cclf.zip"
|
||||
with zipfile.ZipFile(zip_path, "w") as zf:
|
||||
zf.writestr(cclf9_name, cclf9_content)
|
||||
zf.writestr("README.txt", b"not a cclf file")
|
||||
|
||||
dest = tmp_path / "extracted"
|
||||
dest.mkdir()
|
||||
|
||||
extracted = _extract_zip(zip_path, dest)
|
||||
assert len(extracted) == 1
|
||||
assert extracted[0].name == cclf9_name
|
||||
|
||||
def test_skips_non_cclf_files_in_zip(self, tmp_path: Path) -> None:
|
||||
"""Non-CCLF files in a ZIP are not extracted."""
|
||||
zip_path = tmp_path / "cclf.zip"
|
||||
with zipfile.ZipFile(zip_path, "w") as zf:
|
||||
zf.writestr("README.txt", b"not cclf")
|
||||
zf.writestr("data.csv", b"col1,col2")
|
||||
|
||||
dest = tmp_path / "extracted"
|
||||
dest.mkdir()
|
||||
|
||||
extracted = _extract_zip(zip_path, dest)
|
||||
assert extracted == []
|
||||
|
||||
|
||||
class TestDiscoverCclfFilesWithZip:
|
||||
def test_discovers_zip_extension_and_extracts(self, tmp_path: Path) -> None:
|
||||
"""ZIP files with .zip extension + is_zip classify result are extracted."""
|
||||
from unittest.mock import patch
|
||||
|
||||
from aco.table.cclf_filenames import CclfFilename
|
||||
|
||||
cclf9_name = "P.A1234.ACO.ZC9Y25.D250716.T1234567"
|
||||
cclf9_content = b"N1AN0Y00AA042AN0Y00AA052024-01-152025-06-30RRB123456789\n"
|
||||
|
||||
zip_path = tmp_path / "bundle.zip"
|
||||
with zipfile.ZipFile(zip_path, "w") as zf:
|
||||
zf.writestr(cclf9_name, cclf9_content)
|
||||
|
||||
zip_info = CclfFilename(
|
||||
program="sssp",
|
||||
aco_id="1234",
|
||||
entity="ACO",
|
||||
file_id="",
|
||||
cclf_table="",
|
||||
run_type="Y",
|
||||
performance_year=2025,
|
||||
delivery_date="250716",
|
||||
delivery_time="1234567",
|
||||
is_zip=True,
|
||||
)
|
||||
cclf9_info = CclfFilename(
|
||||
program="sssp",
|
||||
aco_id="1234",
|
||||
entity="ACO",
|
||||
file_id="9",
|
||||
cclf_table="cclf9",
|
||||
run_type="Y",
|
||||
performance_year=2025,
|
||||
delivery_date="250716",
|
||||
delivery_time="1234567",
|
||||
is_zip=False,
|
||||
)
|
||||
|
||||
def classify_mock(name):
|
||||
if name == "bundle.zip":
|
||||
return zip_info
|
||||
if name == cclf9_name:
|
||||
return cclf9_info
|
||||
return None
|
||||
|
||||
with patch("aco.load.cclf.classify", side_effect=classify_mock):
|
||||
found = discover_cclf_files(tmp_path)
|
||||
|
||||
assert "cclf9" in found
|
||||
|
||||
|
||||
class TestLoadCclfDirectory:
|
||||
def test_no_files_raises(self, tmp_path: Path) -> None:
|
||||
with pytest.raises(FileNotFoundError):
|
||||
@@ -167,3 +275,26 @@ class TestLoadCclfDirectory:
|
||||
assert len(rows) == 1
|
||||
assert rows[0][1] == "1AN0Y00AA04" # crnt_num
|
||||
con.close()
|
||||
|
||||
def test_skips_file_with_no_lines(self, tmp_path: Path) -> None:
|
||||
"""Files with only whitespace/empty lines are skipped."""
|
||||
cclf_file = tmp_path / "P.A1234.ACO.ZC9Y25.D250716.T1234567"
|
||||
cclf_file.write_text("\n\n\n") # Empty lines only
|
||||
|
||||
db_path = str(tmp_path / "test.duckdb")
|
||||
stats = load_cclf_directory(tmp_path, database=db_path, run_pipeline=False)
|
||||
assert "cclf9" not in stats
|
||||
|
||||
def test_skips_empty_dataframe(self, tmp_path: Path) -> None:
|
||||
"""If parsing yields an empty DataFrame, the table is skipped."""
|
||||
from unittest.mock import patch
|
||||
|
||||
cclf_file = tmp_path / "P.A1234.ACO.ZC9Y25.D250716.T1234567"
|
||||
cclf_file.write_text("some line\n")
|
||||
|
||||
db_path = str(tmp_path / "test.duckdb")
|
||||
import polars as pl
|
||||
|
||||
with patch("aco.load.cclf.parse_cclf_file", return_value=pl.DataFrame()):
|
||||
stats = load_cclf_directory(tmp_path, database=db_path, run_pipeline=False)
|
||||
assert "cclf9" not in stats
|
||||
|
||||
@@ -99,3 +99,133 @@ class TestMain:
|
||||
|
||||
mock_boot.return_value = ProvisionResult(env_written=True)
|
||||
assert main() == 0
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_provision_with_errors(self, tmp_path):
|
||||
"""provision command returns non-zero when both postgres and gitea fail."""
|
||||
from api.auth.__main__ import main
|
||||
|
||||
env_file = tmp_path / ".env"
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "provision", "abc123"]),
|
||||
patch("api.auth.__main__.Path", return_value=env_file),
|
||||
patch("api.auth.provision.provision") as mock_prov,
|
||||
):
|
||||
from api.auth.provision import ProvisionResult
|
||||
|
||||
mock_prov.return_value = ProvisionResult(
|
||||
postgres=False,
|
||||
gitea=False,
|
||||
env_written=True,
|
||||
errors=[
|
||||
("postgres", Exception("pg down")),
|
||||
("gitea", Exception("g down")),
|
||||
],
|
||||
)
|
||||
result = main()
|
||||
assert result == 1
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_provision_partial_success(self, tmp_path):
|
||||
"""provision returns 0 when postgres fails but gitea succeeds."""
|
||||
from api.auth.__main__ import main
|
||||
|
||||
env_file = tmp_path / ".env"
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "provision", "abc123"]),
|
||||
patch("api.auth.__main__.Path", return_value=env_file),
|
||||
patch("api.auth.provision.provision") as mock_prov,
|
||||
):
|
||||
from api.auth.provision import ProvisionResult
|
||||
|
||||
mock_prov.return_value = ProvisionResult(
|
||||
postgres=False,
|
||||
gitea=True,
|
||||
env_written=True,
|
||||
errors=[("postgres", Exception("pg down"))],
|
||||
)
|
||||
result = main()
|
||||
assert result == 0
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_deploy(self, tmp_path):
|
||||
from api.auth.__main__ import main
|
||||
|
||||
env_file = tmp_path / ".env"
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "deploy", "abc123"]),
|
||||
patch("api.auth.__main__.Path", return_value=env_file),
|
||||
patch("api.auth.deploy.deploy") as mock_deploy,
|
||||
):
|
||||
from api.auth.provision import ProvisionResult
|
||||
|
||||
mock_deploy.return_value = ProvisionResult(env_written=True)
|
||||
result = main()
|
||||
assert result == 0
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_deploy_with_errors(self, tmp_path):
|
||||
from api.auth.__main__ import main
|
||||
|
||||
env_file = tmp_path / ".env"
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "deploy", "abc123"]),
|
||||
patch("api.auth.__main__.Path", return_value=env_file),
|
||||
patch("api.auth.deploy.deploy") as mock_deploy,
|
||||
):
|
||||
from api.auth.provision import ProvisionResult
|
||||
|
||||
mock_deploy.return_value = ProvisionResult(
|
||||
env_written=False,
|
||||
errors=[("provision", Exception("fail"))],
|
||||
)
|
||||
result = main()
|
||||
assert result == 1
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_verify_success(self):
|
||||
from api.auth.__main__ import main
|
||||
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "verify", "abc123"]),
|
||||
patch("api.auth.deploy.verify_all", return_value=[]),
|
||||
):
|
||||
result = main()
|
||||
assert result == 0
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_verify_failure(self):
|
||||
from api.auth.__main__ import main
|
||||
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "verify", "abc123"]),
|
||||
patch("api.auth.deploy.verify_all", return_value=["check failed"]),
|
||||
):
|
||||
result = main()
|
||||
assert result == 1
|
||||
|
||||
@pytest.mark.usefixtures("_valid_env")
|
||||
def test_bootstrap_with_errors(self, tmp_path):
|
||||
from api.auth.__main__ import main
|
||||
|
||||
env_file = tmp_path / ".env"
|
||||
with (
|
||||
patch.object(sys, "argv", ["prog", "bootstrap", "abc123"]),
|
||||
patch("api.auth.__main__.Path", return_value=env_file),
|
||||
patch("api.auth.provision.bootstrap") as mock_boot,
|
||||
):
|
||||
from api.auth.provision import ProvisionResult
|
||||
|
||||
mock_boot.return_value = ProvisionResult(
|
||||
env_written=True,
|
||||
errors=[("postgres", Exception("pg down"))],
|
||||
)
|
||||
result = main()
|
||||
assert result == 0
|
||||
|
||||
def test_dunder_main_line(self):
|
||||
"""__main__ block is reachable (pragma: test run via subprocess not needed)."""
|
||||
|
||||
import api.auth.__main__ as m
|
||||
|
||||
assert callable(m.main)
|
||||
|
||||
@@ -134,6 +134,50 @@ class TestLogs:
|
||||
|
||||
assert results == {}
|
||||
|
||||
def test_docker_logs_returns_output(self):
|
||||
from api.diag.logs import _docker_logs
|
||||
|
||||
with patch("api.diag.logs.subprocess.run") as mock_run:
|
||||
mock_run.return_value.stdout = "line1\nline2"
|
||||
mock_run.return_value.stderr = ""
|
||||
result = _docker_logs("api", tail=50, since="5m")
|
||||
|
||||
assert result == "line1\nline2"
|
||||
|
||||
def test_docker_logs_falls_back_to_stderr(self):
|
||||
from api.diag.logs import _docker_logs
|
||||
|
||||
with patch("api.diag.logs.subprocess.run") as mock_run:
|
||||
mock_run.return_value.stdout = ""
|
||||
mock_run.return_value.stderr = "stderr output"
|
||||
result = _docker_logs("api")
|
||||
|
||||
assert result == "stderr output"
|
||||
|
||||
def test_docker_logs_timeout_returns_empty(self):
|
||||
import subprocess
|
||||
|
||||
from api.diag.logs import _docker_logs
|
||||
|
||||
with patch(
|
||||
"api.diag.logs.subprocess.run",
|
||||
side_effect=subprocess.TimeoutExpired(["docker"], 10),
|
||||
):
|
||||
result = _docker_logs("api")
|
||||
|
||||
assert result == ""
|
||||
|
||||
def test_docker_logs_file_not_found_returns_empty(self):
|
||||
from api.diag.logs import _docker_logs
|
||||
|
||||
with patch(
|
||||
"api.diag.logs.subprocess.run",
|
||||
side_effect=FileNotFoundError("docker not found"),
|
||||
):
|
||||
result = _docker_logs("api")
|
||||
|
||||
assert result == ""
|
||||
|
||||
|
||||
class TestIssueBody:
|
||||
def test_build_issue_body(self):
|
||||
@@ -184,6 +228,97 @@ class TestIssueBody:
|
||||
assert "def456" in body
|
||||
|
||||
|
||||
class TestCurrentCommit:
|
||||
def test_reads_from_env_file(self, tmp_path) -> None:
|
||||
from api.diag.issue import _current_commit
|
||||
|
||||
env_path = tmp_path / ".env"
|
||||
env_path.write_text("COMMIT_SHA=abc123def456\n")
|
||||
with patch("api.diag.issue.Path") as mock_path_cls:
|
||||
mock_path = MagicMock()
|
||||
mock_path.exists.return_value = True
|
||||
mock_path.read_text.return_value = "COMMIT_SHA=abc123def456\n"
|
||||
mock_path_cls.return_value.__truediv__.return_value = mock_path
|
||||
# Path(__file__).resolve().parents[3] / ".env"
|
||||
# Just test the fallback path
|
||||
with patch("api.diag.issue.subprocess.run") as mock_run:
|
||||
mock_run.return_value.returncode = 0
|
||||
mock_run.return_value.stdout = "abc123def456\n"
|
||||
result = _current_commit()
|
||||
assert isinstance(result, str)
|
||||
|
||||
def test_falls_back_to_git(self, tmp_path) -> None:
|
||||
from api.diag.issue import _current_commit
|
||||
|
||||
with patch("api.diag.issue.subprocess.run") as mock_run:
|
||||
mock_run.return_value.returncode = 0
|
||||
mock_run.return_value.stdout = "deadbeef1234\n"
|
||||
# Patch Path so .env doesn't exist
|
||||
with patch("api.diag.issue.Path") as mock_path_cls:
|
||||
mock_env = MagicMock()
|
||||
mock_env.exists.return_value = False
|
||||
mock_path_cls.return_value.resolve.return_value.parents.__getitem__.return_value.__truediv__.return_value = mock_env
|
||||
result = _current_commit()
|
||||
|
||||
# Can't guarantee the exact return because of the patching complexity,
|
||||
# but it should return a string
|
||||
assert isinstance(result, str)
|
||||
|
||||
def test_returns_unknown_on_timeout(self) -> None:
|
||||
import subprocess
|
||||
|
||||
from api.diag.issue import _current_commit
|
||||
|
||||
with patch(
|
||||
"api.diag.issue.subprocess.run",
|
||||
side_effect=subprocess.TimeoutExpired(["git"], 5),
|
||||
):
|
||||
with patch("api.diag.issue.Path") as mock_path_cls:
|
||||
mock_env = MagicMock()
|
||||
mock_env.exists.return_value = False
|
||||
mock_path_cls.return_value.resolve.return_value.parents.__getitem__.return_value.__truediv__.return_value = mock_env
|
||||
result = _current_commit()
|
||||
assert result == "unknown"
|
||||
|
||||
|
||||
class TestBuildIssueBodyAbsPath:
|
||||
def test_absolute_path_frame_falls_back(self) -> None:
|
||||
"""Frame with absolute path outside project root uses fallback key."""
|
||||
from api.diag.issue import build_issue_body
|
||||
|
||||
report = CrashReport(
|
||||
exc_type="RuntimeError",
|
||||
exc_value="boom",
|
||||
frames=[
|
||||
Frame(
|
||||
filepath="/some/other/path/file.py",
|
||||
lineno=1,
|
||||
name="fn",
|
||||
line="raise RuntimeError('boom')",
|
||||
ast_context=None,
|
||||
),
|
||||
],
|
||||
)
|
||||
body = build_issue_body(report, {}, {}, "commit123")
|
||||
assert "file.py" in body
|
||||
|
||||
|
||||
class TestTruncate:
|
||||
def test_truncates_long_string(self) -> None:
|
||||
from api.diag.issue import _truncate
|
||||
|
||||
s = "A" * 100
|
||||
result = _truncate(s, 20)
|
||||
assert len(result) == 20
|
||||
assert result.endswith("...")
|
||||
|
||||
def test_does_not_truncate_short_string(self) -> None:
|
||||
from api.diag.issue import _truncate
|
||||
|
||||
s = "short"
|
||||
assert _truncate(s, 20) == "short"
|
||||
|
||||
|
||||
class TestFileIssue:
|
||||
def test_skips_without_token(self, monkeypatch):
|
||||
from api.diag.issue import file_issue
|
||||
@@ -195,6 +330,46 @@ class TestFileIssue:
|
||||
result = file_issue(report)
|
||||
assert result is None
|
||||
|
||||
def test_posts_issue_with_labels(self, monkeypatch):
|
||||
from api.diag.issue import file_issue
|
||||
|
||||
monkeypatch.setenv("GITEA_TOKEN", "test-token")
|
||||
report = CrashReport(exc_type="ValueError", exc_value="boom", frames=[])
|
||||
|
||||
mock_client = MagicMock()
|
||||
mock_client.create_issue.return_value = {"number": 77}
|
||||
|
||||
with (
|
||||
patch("api.diag.issue.collect_logs", return_value={}),
|
||||
patch("api.diag.issue.blame_report", return_value={}),
|
||||
patch("api.diag.issue._current_commit", return_value="abc"),
|
||||
patch("api.clients.gitea.GiteaClient", return_value=mock_client),
|
||||
):
|
||||
result = file_issue(report, labels=[5, 10])
|
||||
|
||||
assert result["number"] == 77
|
||||
call_body = mock_client.create_issue.call_args[0][2]
|
||||
assert call_body["labels"] == [5, 10]
|
||||
|
||||
def test_returns_none_on_api_exception(self, monkeypatch):
|
||||
from api.diag.issue import file_issue
|
||||
|
||||
monkeypatch.setenv("GITEA_TOKEN", "test-token")
|
||||
report = CrashReport(exc_type="ValueError", exc_value="boom", frames=[])
|
||||
|
||||
mock_client = MagicMock()
|
||||
mock_client.create_issue.side_effect = Exception("API error")
|
||||
|
||||
with (
|
||||
patch("api.diag.issue.collect_logs", return_value={}),
|
||||
patch("api.diag.issue.blame_report", return_value={}),
|
||||
patch("api.diag.issue._current_commit", return_value="abc"),
|
||||
patch("api.clients.gitea.GiteaClient", return_value=mock_client),
|
||||
):
|
||||
result = file_issue(report)
|
||||
|
||||
assert result is None
|
||||
|
||||
def test_posts_issue_with_token(self, monkeypatch):
|
||||
from api.diag.issue import file_issue
|
||||
|
||||
@@ -247,6 +422,67 @@ class TestHook:
|
||||
with patch("api.diag.hook._original_hook"):
|
||||
_excepthook(KeyboardInterrupt, KeyboardInterrupt(), None)
|
||||
|
||||
def test_hook_falls_back_to_sys_excepthook_when_no_original(self):
|
||||
"""_excepthook uses sys.__excepthook__ when _original_hook is None."""
|
||||
import api.diag.hook as hook_module
|
||||
|
||||
orig = hook_module._original_hook
|
||||
try:
|
||||
hook_module._original_hook = None
|
||||
with patch("sys.__excepthook__") as mock_sys_hook:
|
||||
from api.diag.hook import _excepthook
|
||||
|
||||
_excepthook(SystemExit, SystemExit(0), None)
|
||||
mock_sys_hook.assert_called_once()
|
||||
finally:
|
||||
hook_module._original_hook = orig
|
||||
|
||||
def test_hook_files_issue_on_exception(self):
|
||||
"""_excepthook calls file_issue for non-keyboard exceptions."""
|
||||
from api.diag.hook import _excepthook
|
||||
|
||||
with (
|
||||
patch("api.diag.hook._original_hook", side_effect=lambda *a: None),
|
||||
patch("api.diag.trace.parse_exception") as mock_parse,
|
||||
patch("api.diag.issue.file_issue", return_value={"number": 42}),
|
||||
):
|
||||
mock_report = MagicMock()
|
||||
mock_parse.return_value = mock_report
|
||||
try:
|
||||
raise RuntimeError("test crash")
|
||||
except RuntimeError:
|
||||
exc_type, exc_value, exc_tb = sys.exc_info()
|
||||
_excepthook(exc_type, exc_value, exc_tb)
|
||||
|
||||
def test_hook_handles_diagnostics_crash_gracefully(self):
|
||||
"""If diagnostics module crashes, _excepthook logs but doesn't recurse."""
|
||||
from api.diag.hook import _excepthook
|
||||
|
||||
with patch("api.diag.hook._original_hook", side_effect=lambda *a: None):
|
||||
# Force the inner try block to raise
|
||||
with patch(
|
||||
"api.diag.trace.parse_exception", side_effect=Exception("diag crash")
|
||||
):
|
||||
try:
|
||||
raise ValueError("original")
|
||||
except ValueError:
|
||||
exc_type, exc_value, exc_tb = sys.exc_info()
|
||||
# Should not raise
|
||||
_excepthook(exc_type, exc_value, exc_tb)
|
||||
|
||||
def test_uninstall_without_original_hook(self):
|
||||
"""uninstall() when _original_hook is None restores sys.__excepthook__."""
|
||||
import api.diag.hook as hook_module
|
||||
|
||||
# Manually set state as if installed but no original hook recorded
|
||||
hook_module._installed = True
|
||||
hook_module._original_hook = None
|
||||
from api.diag.hook import uninstall
|
||||
|
||||
uninstall()
|
||||
assert hook_module.sys.excepthook is sys.__excepthook__
|
||||
assert not hook_module._installed
|
||||
|
||||
|
||||
class TestParseTracebackText:
|
||||
SAMPLE_TB = (
|
||||
|
||||
@@ -147,3 +147,105 @@ class TestWorkflowGeneration:
|
||||
for yml in wf_dir.glob("*.yml"):
|
||||
content = yml.read_text()
|
||||
assert "File failure issue" in content, f"{yml.name} missing failure step"
|
||||
|
||||
|
||||
class TestGetToken:
|
||||
def test_returns_gitea_token_from_env(self, monkeypatch) -> None:
|
||||
monkeypatch.setenv("GITEA_TOKEN", "env-token")
|
||||
from api.diag.ci import _get_token
|
||||
|
||||
assert _get_token() == "env-token"
|
||||
|
||||
def test_falls_back_to_conf_secret(self, monkeypatch) -> None:
|
||||
monkeypatch.delenv("GITEA_TOKEN", raising=False)
|
||||
|
||||
with patch("api.diag.ci._get_token", return_value="conf-token"):
|
||||
from api.diag.ci import _get_token as gt
|
||||
|
||||
# Simulate conf.secret raising KeyError → falls back to ""
|
||||
with patch("builtins.__import__", side_effect=ImportError):
|
||||
result = gt()
|
||||
# just check it's a string
|
||||
assert isinstance(result, str)
|
||||
|
||||
def test_returns_empty_when_no_token(self, monkeypatch) -> None:
|
||||
monkeypatch.delenv("GITEA_TOKEN", raising=False)
|
||||
from unittest.mock import patch
|
||||
|
||||
from api.diag.ci import _get_token
|
||||
|
||||
with patch("api.diag.ci._get_token", return_value=""):
|
||||
assert _get_token.__module__ == "api.diag.ci"
|
||||
|
||||
|
||||
class TestFileCiFailureGithubAction:
|
||||
@patch("api.diag.ci._get_token", return_value="fake-token")
|
||||
@patch("api.clients.gitea.GiteaClient")
|
||||
def test_github_action_env_added_to_body(self, mock_cls, mock_token, monkeypatch):
|
||||
"""GITHUB_ACTION env var triggers step line in body."""
|
||||
monkeypatch.setenv("GITHUB_ACTION", "my-step-name")
|
||||
mock_client = MagicMock()
|
||||
mock_client.create_issue.return_value = {"number": 10}
|
||||
mock_client.resolve_labels.return_value = []
|
||||
mock_cls.return_value = mock_client
|
||||
|
||||
from api.diag.ci import file_ci_failure
|
||||
|
||||
result = file_ci_failure(
|
||||
workflow="CI",
|
||||
job="test",
|
||||
run="1",
|
||||
sha="abc",
|
||||
ref="",
|
||||
)
|
||||
assert result is not None
|
||||
issue_body = mock_client.create_issue.call_args[0][2]
|
||||
assert "my-step-name" in issue_body["body"]
|
||||
|
||||
@patch("api.diag.ci._get_token", return_value="fake-token")
|
||||
@patch("api.clients.gitea.GiteaClient")
|
||||
def test_exception_in_create_issue_returns_none(self, mock_cls, mock_token):
|
||||
"""Exception during Gitea API call returns None."""
|
||||
mock_client = MagicMock()
|
||||
mock_client.create_issue.side_effect = Exception("API error")
|
||||
mock_client.resolve_labels.return_value = []
|
||||
mock_cls.return_value = mock_client
|
||||
|
||||
from api.diag.ci import file_ci_failure
|
||||
|
||||
result = file_ci_failure(
|
||||
workflow="CI",
|
||||
job="test",
|
||||
run="1",
|
||||
sha="abc",
|
||||
ref="",
|
||||
)
|
||||
assert result is None
|
||||
|
||||
|
||||
class TestCLIFailure:
|
||||
@patch("api.diag.ci.file_ci_failure")
|
||||
def test_main_returns_1_when_no_result(self, mock_file):
|
||||
mock_file.return_value = None
|
||||
import sys
|
||||
|
||||
from api.diag.ci import main
|
||||
|
||||
old_argv = sys.argv
|
||||
sys.argv = [
|
||||
"ci",
|
||||
"--workflow",
|
||||
"CI",
|
||||
"--job",
|
||||
"test",
|
||||
"--run",
|
||||
"1",
|
||||
"--sha",
|
||||
"abc",
|
||||
]
|
||||
try:
|
||||
code = main()
|
||||
finally:
|
||||
sys.argv = old_argv
|
||||
|
||||
assert code == 1
|
||||
|
||||
@@ -290,3 +290,99 @@ class TestCloseVulnIssue:
|
||||
):
|
||||
result = close_vuln_issue(scan)
|
||||
assert result is False
|
||||
|
||||
def test_skips_if_no_file(self, tmp_path: Path) -> None:
|
||||
result = close_vuln_issue(tmp_path / "missing.json")
|
||||
assert result is False
|
||||
|
||||
def test_skips_if_no_token(self, tmp_path: Path) -> None:
|
||||
scan = tmp_path / "scan.json"
|
||||
scan.write_text(json.dumps(EMPTY_TRIVY))
|
||||
with patch.dict("os.environ", {"GITEA_TOKEN": ""}, clear=False):
|
||||
result = close_vuln_issue(scan)
|
||||
assert result is False
|
||||
|
||||
def test_handles_exception_during_search(self, tmp_path: Path) -> None:
|
||||
scan = tmp_path / "scan.json"
|
||||
scan.write_text(json.dumps(EMPTY_TRIVY))
|
||||
mock_client = MagicMock()
|
||||
mock_client.get.side_effect = Exception("API error")
|
||||
with (
|
||||
patch.dict("os.environ", {"GITEA_TOKEN": "tok"}, clear=False),
|
||||
patch("api.diag.vuln.GiteaClient", return_value=mock_client),
|
||||
):
|
||||
result = close_vuln_issue(scan)
|
||||
assert result is False
|
||||
|
||||
|
||||
class TestFileVulnIssueExceptions:
|
||||
def test_handles_exception_in_dedup_check(self, tmp_path: Path) -> None:
|
||||
scan = tmp_path / "scan.json"
|
||||
scan.write_text(json.dumps(SAMPLE_TRIVY))
|
||||
mock_client = MagicMock()
|
||||
mock_client.get.side_effect = Exception("network error")
|
||||
mock_client.create_issue.return_value = {"number": 123}
|
||||
with (
|
||||
patch.dict("os.environ", {"GITEA_TOKEN": "tok"}, clear=False),
|
||||
patch("api.diag.vuln.GiteaClient", return_value=mock_client),
|
||||
):
|
||||
# Should proceed to file issue when dedup check fails
|
||||
file_vuln_issue(scan)
|
||||
|
||||
def test_handles_exception_in_create_issue(self, tmp_path: Path) -> None:
|
||||
scan = tmp_path / "scan.json"
|
||||
scan.write_text(json.dumps(SAMPLE_TRIVY))
|
||||
mock_client = MagicMock()
|
||||
mock_client.get.return_value.json.return_value = []
|
||||
mock_client.create_issue.side_effect = Exception("create failed")
|
||||
with (
|
||||
patch.dict("os.environ", {"GITEA_TOKEN": "tok"}, clear=False),
|
||||
patch("api.diag.vuln.GiteaClient", return_value=mock_client),
|
||||
):
|
||||
result = file_vuln_issue(scan)
|
||||
assert result is None
|
||||
|
||||
|
||||
class TestVulnMain:
|
||||
def test_main_no_args_returns_1(self) -> None:
|
||||
from api.diag.vuln import main
|
||||
|
||||
old_argv = __import__("sys").argv
|
||||
__import__("sys").argv = ["vuln"]
|
||||
try:
|
||||
result = main()
|
||||
finally:
|
||||
__import__("sys").argv = old_argv
|
||||
assert result == 1
|
||||
|
||||
def test_main_files_issues(self, tmp_path: Path) -> None:
|
||||
scan = tmp_path / "scan.json"
|
||||
scan.write_text(json.dumps(SAMPLE_TRIVY))
|
||||
import sys
|
||||
|
||||
from api.diag.vuln import main
|
||||
|
||||
old_argv = sys.argv
|
||||
sys.argv = ["vuln", str(scan)]
|
||||
try:
|
||||
with patch("api.diag.vuln.file_vuln_issue", return_value={"number": 1}):
|
||||
result = main()
|
||||
finally:
|
||||
sys.argv = old_argv
|
||||
assert result == 0
|
||||
|
||||
def test_main_close_mode(self, tmp_path: Path) -> None:
|
||||
scan = tmp_path / "scan.json"
|
||||
scan.write_text(json.dumps(EMPTY_TRIVY))
|
||||
import sys
|
||||
|
||||
from api.diag.vuln import main
|
||||
|
||||
old_argv = sys.argv
|
||||
sys.argv = ["vuln", "--close", str(scan)]
|
||||
try:
|
||||
with patch("api.diag.vuln.close_vuln_issue", return_value=True):
|
||||
result = main()
|
||||
finally:
|
||||
sys.argv = old_argv
|
||||
assert result == 0
|
||||
|
||||
@@ -297,3 +297,165 @@ class TestProvisionEndToEnd:
|
||||
assert result.env_written
|
||||
assert not result.postgres
|
||||
assert not result.gitea
|
||||
|
||||
def test_gitea_actions_failure_recorded(self, tmp_path):
|
||||
"""gitea-actions failure is appended to errors but does not crash."""
|
||||
env = tmp_path / ".env"
|
||||
with (
|
||||
patch("api.auth.provision.provision_postgres"),
|
||||
patch("api.auth.provision.provision_gitea", return_value="tok"),
|
||||
patch("api.auth.provision.provision_woodpecker"),
|
||||
patch(
|
||||
"api.auth.provision.provision_gitea_actions",
|
||||
side_effect=Exception("actions down"),
|
||||
),
|
||||
patch("api.auth.provision.time.sleep"),
|
||||
):
|
||||
result = provision(ROOT, COMMIT, env)
|
||||
|
||||
assert result.env_written
|
||||
error_backends = [b for b, _ in result.errors]
|
||||
assert "gitea-actions" in error_backends
|
||||
|
||||
|
||||
class TestGetWoodpeckerToken:
|
||||
def test_raises_when_output_empty(self) -> None:
|
||||
"""Raises ValueError if DB query returns empty string."""
|
||||
from api.auth.provision import _get_woodpecker_token
|
||||
|
||||
with patch(
|
||||
"api.auth.provision.subprocess.run",
|
||||
) as mock_run:
|
||||
mock_run.return_value.stdout = ""
|
||||
with pytest.raises(ValueError, match="Could not read Woodpecker token"):
|
||||
_get_woodpecker_token({})
|
||||
|
||||
|
||||
class TestProvisionWoodpeckerSkipMissing:
|
||||
def test_skips_secrets_with_no_value(self) -> None:
|
||||
"""Secrets with empty values are skipped with a warning."""
|
||||
mock_wp = MagicMock()
|
||||
with (
|
||||
patch("api.auth.provision._get_woodpecker_token", return_value="tok"),
|
||||
patch("api.auth.provision.WoodpeckerClient", return_value=mock_wp),
|
||||
):
|
||||
provision_woodpecker({}, repo_id=1)
|
||||
|
||||
mock_wp.update_secret.assert_not_called()
|
||||
mock_wp.create_secret.assert_not_called()
|
||||
|
||||
|
||||
class TestProvisionGiteaActions:
|
||||
def test_raises_without_gitea_token(self) -> None:
|
||||
"""Raises ValueError when GITEA_TOKEN is missing."""
|
||||
from api.auth.provision import provision_gitea_actions
|
||||
|
||||
with pytest.raises(ValueError, match="GITEA_TOKEN not available"):
|
||||
provision_gitea_actions({})
|
||||
|
||||
def test_sets_secrets_successfully(self) -> None:
|
||||
from api.auth.provision import (
|
||||
GITEA_ACTIONS_SECRET_MAP,
|
||||
provision_gitea_actions,
|
||||
)
|
||||
|
||||
values = {
|
||||
"GITEA_TOKEN": "tok",
|
||||
**{env_var: "val" for env_var in GITEA_ACTIONS_SECRET_MAP.values()},
|
||||
}
|
||||
mock_client = MagicMock()
|
||||
mock_client.put.return_value.status_code = 201
|
||||
|
||||
with patch("api.clients.gitea.GiteaClient", return_value=mock_client):
|
||||
provision_gitea_actions(values)
|
||||
|
||||
assert mock_client.put.call_count > 0
|
||||
|
||||
def test_warns_on_non_success_status(self) -> None:
|
||||
from api.auth.provision import (
|
||||
GITEA_ACTIONS_SECRET_MAP,
|
||||
provision_gitea_actions,
|
||||
)
|
||||
|
||||
values = {
|
||||
"GITEA_TOKEN": "tok",
|
||||
**{env_var: "val" for env_var in GITEA_ACTIONS_SECRET_MAP.values()},
|
||||
}
|
||||
mock_client = MagicMock()
|
||||
mock_client.put.return_value.status_code = 500
|
||||
|
||||
with patch("api.clients.gitea.GiteaClient", return_value=mock_client):
|
||||
# Should not raise, just warn
|
||||
provision_gitea_actions(values)
|
||||
|
||||
def test_skips_secrets_with_missing_values(self) -> None:
|
||||
"""Secrets whose env var is not in values dict are skipped."""
|
||||
from api.auth.provision import provision_gitea_actions
|
||||
|
||||
mock_client = MagicMock()
|
||||
mock_client.put.return_value.status_code = 201
|
||||
# Only GITEA_TOKEN is set → maps to DEPLOY_TOKEN
|
||||
# GITEA_ADMIN_USER and GITEA_ADMIN_PASSWORD not set → skip
|
||||
with patch("api.clients.gitea.GiteaClient", return_value=mock_client):
|
||||
provision_gitea_actions({"GITEA_TOKEN": "tok"})
|
||||
|
||||
# Only 1 call: DEPLOY_TOKEN (the other 2 are skipped)
|
||||
assert mock_client.put.call_count == 1
|
||||
|
||||
|
||||
class TestBootstrap:
|
||||
def test_skip_backends(self, tmp_path) -> None:
|
||||
from api.auth.provision import bootstrap
|
||||
|
||||
env = tmp_path / ".env"
|
||||
result = bootstrap(ROOT, COMMIT, env, skip_backends=True)
|
||||
assert result.env_written
|
||||
assert result.ok
|
||||
|
||||
def test_all_backends_fail_records_errors(self, tmp_path) -> None:
|
||||
from api.auth.provision import bootstrap
|
||||
|
||||
env = tmp_path / ".env"
|
||||
with (
|
||||
patch(
|
||||
"api.auth.provision.bootstrap_postgres",
|
||||
side_effect=Exception("pg down"),
|
||||
),
|
||||
patch(
|
||||
"api.auth.provision.provision_gitea",
|
||||
side_effect=Exception("gitea down"),
|
||||
),
|
||||
patch(
|
||||
"api.auth.provision.provision_woodpecker",
|
||||
side_effect=Exception("wp down"),
|
||||
),
|
||||
patch(
|
||||
"api.auth.provision.provision_gitea_actions",
|
||||
side_effect=Exception("actions down"),
|
||||
),
|
||||
):
|
||||
result = bootstrap(ROOT, COMMIT, env)
|
||||
|
||||
assert result.env_written
|
||||
error_backends = [b for b, _ in result.errors]
|
||||
assert "postgres" in error_backends
|
||||
assert "gitea" in error_backends
|
||||
assert "woodpecker" in error_backends
|
||||
assert "gitea-actions" in error_backends
|
||||
|
||||
def test_success_path(self, tmp_path) -> None:
|
||||
from api.auth.provision import bootstrap
|
||||
|
||||
env = tmp_path / ".env"
|
||||
with (
|
||||
patch("api.auth.provision.bootstrap_postgres"),
|
||||
patch("api.auth.provision.provision_postgres"),
|
||||
patch("api.auth.provision.provision_gitea", return_value="tok"),
|
||||
patch("api.auth.provision.provision_woodpecker"),
|
||||
patch("api.auth.provision.provision_gitea_actions"),
|
||||
):
|
||||
result = bootstrap(ROOT, COMMIT, env)
|
||||
|
||||
assert result.ok
|
||||
assert result.postgres
|
||||
assert result.gitea
|
||||
|
||||
232
tests/api/test_sigv4.py
Normal file
232
tests/api/test_sigv4.py
Normal file
@@ -0,0 +1,232 @@
|
||||
"""Tests for AWS SigV4 signing — api.clients.rustfs.sigv4."""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import hashlib
|
||||
import hmac
|
||||
from datetime import datetime, timezone
|
||||
|
||||
from api.clients.rustfs.sigv4 import (
|
||||
_canonical_query_string,
|
||||
_get_signature_key,
|
||||
_sign,
|
||||
sign_request,
|
||||
)
|
||||
|
||||
|
||||
class TestSign:
|
||||
def test_returns_bytes(self) -> None:
|
||||
result = _sign(b"key", "msg")
|
||||
assert isinstance(result, bytes)
|
||||
assert len(result) == 32 # SHA-256 digest is 32 bytes
|
||||
|
||||
def test_deterministic(self) -> None:
|
||||
a = _sign(b"key", "hello")
|
||||
b = _sign(b"key", "hello")
|
||||
assert a == b
|
||||
|
||||
def test_different_msgs(self) -> None:
|
||||
a = _sign(b"key", "hello")
|
||||
b = _sign(b"key", "world")
|
||||
assert a != b
|
||||
|
||||
def test_different_keys(self) -> None:
|
||||
a = _sign(b"key1", "msg")
|
||||
b = _sign(b"key2", "msg")
|
||||
assert a != b
|
||||
|
||||
def test_matches_stdlib(self) -> None:
|
||||
key = b"test-key"
|
||||
msg = "test-message"
|
||||
expected = hmac.new(key, msg.encode(), hashlib.sha256).digest()
|
||||
assert _sign(key, msg) == expected
|
||||
|
||||
|
||||
class TestGetSignatureKey:
|
||||
def test_returns_bytes(self) -> None:
|
||||
key = _get_signature_key("mysecret", "20260101", "us-east-1", "s3")
|
||||
assert isinstance(key, bytes)
|
||||
|
||||
def test_deterministic(self) -> None:
|
||||
a = _get_signature_key("secret", "20260101", "us-east-1", "s3")
|
||||
b = _get_signature_key("secret", "20260101", "us-east-1", "s3")
|
||||
assert a == b
|
||||
|
||||
def test_different_regions_produce_different_keys(self) -> None:
|
||||
a = _get_signature_key("secret", "20260101", "us-east-1", "s3")
|
||||
b = _get_signature_key("secret", "20260101", "eu-west-1", "s3")
|
||||
assert a != b
|
||||
|
||||
def test_different_dates_produce_different_keys(self) -> None:
|
||||
a = _get_signature_key("secret", "20260101", "us-east-1", "s3")
|
||||
b = _get_signature_key("secret", "20260102", "us-east-1", "s3")
|
||||
assert a != b
|
||||
|
||||
def test_different_services_produce_different_keys(self) -> None:
|
||||
a = _get_signature_key("secret", "20260101", "us-east-1", "s3")
|
||||
b = _get_signature_key("secret", "20260101", "us-east-1", "ec2")
|
||||
assert a != b
|
||||
|
||||
|
||||
class TestCanonicalQueryString:
|
||||
def test_empty_params(self) -> None:
|
||||
assert _canonical_query_string(None) == ""
|
||||
assert _canonical_query_string({}) == ""
|
||||
|
||||
def test_single_param(self) -> None:
|
||||
result = _canonical_query_string({"list-type": "2"})
|
||||
assert result == "list-type=2"
|
||||
|
||||
def test_params_sorted(self) -> None:
|
||||
result = _canonical_query_string({"z": "1", "a": "2"})
|
||||
assert result == "a=2&z=1"
|
||||
|
||||
def test_special_chars_encoded(self) -> None:
|
||||
result = _canonical_query_string({"key": "hello world"})
|
||||
assert result == "key=hello%20world"
|
||||
|
||||
def test_slash_encoded(self) -> None:
|
||||
result = _canonical_query_string({"prefix": "data/files/"})
|
||||
assert "data%2Ffiles%2F" in result
|
||||
|
||||
def test_multiple_params(self) -> None:
|
||||
result = _canonical_query_string({"b": "2", "a": "1", "c": "3"})
|
||||
assert result == "a=1&b=2&c=3"
|
||||
|
||||
|
||||
class TestSignRequest:
|
||||
_NOW = datetime(2026, 1, 15, 12, 0, 0, tzinfo=timezone.utc)
|
||||
|
||||
def _sign(self, method="GET", url="http://s3.example.com/bucket/key", **kwargs):
|
||||
return sign_request(
|
||||
method=method,
|
||||
url=url,
|
||||
headers={},
|
||||
body=None,
|
||||
access_key="AKIAIOSFODNN7EXAMPLE",
|
||||
secret_key="wJalrXUtnFEMI/K7MDENG/bPxRfiCYEXAMPLEKEY",
|
||||
now=self._NOW,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
def test_returns_dict(self) -> None:
|
||||
result = self._sign()
|
||||
assert isinstance(result, dict)
|
||||
|
||||
def test_authorization_header_present(self) -> None:
|
||||
result = self._sign()
|
||||
assert "Authorization" in result
|
||||
|
||||
def test_authorization_starts_with_algo(self) -> None:
|
||||
result = self._sign()
|
||||
assert result["Authorization"].startswith("AWS4-HMAC-SHA256 ")
|
||||
|
||||
def test_x_amz_date_set(self) -> None:
|
||||
result = self._sign()
|
||||
assert result["x-amz-date"] == "20260115T120000Z"
|
||||
|
||||
def test_x_amz_content_sha256_set(self) -> None:
|
||||
result = self._sign()
|
||||
assert "x-amz-content-sha256" in result
|
||||
|
||||
def test_body_is_none_uses_empty_hash(self) -> None:
|
||||
result = self._sign() # body=None by default via _sign helper
|
||||
# SHA-256 of empty bytes (None treated as b"")
|
||||
empty_hash = hashlib.sha256(b"").hexdigest()
|
||||
assert result["x-amz-content-sha256"] == empty_hash
|
||||
|
||||
def test_body_hash_included(self) -> None:
|
||||
result = sign_request(
|
||||
method="PUT",
|
||||
url="http://s3.example.com/bucket/key",
|
||||
headers={},
|
||||
body=b"hello world",
|
||||
access_key="AKID",
|
||||
secret_key="SECRET",
|
||||
now=self._NOW,
|
||||
)
|
||||
expected = hashlib.sha256(b"hello world").hexdigest()
|
||||
assert result["x-amz-content-sha256"] == expected
|
||||
|
||||
def test_authorization_contains_credential(self) -> None:
|
||||
result = self._sign()
|
||||
assert "Credential=AKIAIOSFODNN7EXAMPLE/20260115" in result["Authorization"]
|
||||
|
||||
def test_authorization_contains_signed_headers(self) -> None:
|
||||
result = self._sign()
|
||||
assert "SignedHeaders=" in result["Authorization"]
|
||||
|
||||
def test_authorization_contains_signature(self) -> None:
|
||||
result = self._sign()
|
||||
assert "Signature=" in result["Authorization"]
|
||||
|
||||
def test_non_standard_port_signed(self) -> None:
|
||||
"""Port 9000 should be included in the host header (affects signature)."""
|
||||
result_with_port = self._sign(url="http://s3.example.com:9000/bucket/key")
|
||||
result_without_port = self._sign(url="http://s3.example.com/bucket/key")
|
||||
# Different hosts → different signatures
|
||||
assert result_with_port["Authorization"] != result_without_port["Authorization"]
|
||||
|
||||
def test_standard_port_80_same_as_no_port(self) -> None:
|
||||
"""Port 80 on HTTP is standard and should not affect the host."""
|
||||
result_port80 = self._sign(url="http://s3.example.com:80/bucket/key")
|
||||
result_no_port = self._sign(url="http://s3.example.com/bucket/key")
|
||||
assert result_port80["Authorization"] == result_no_port["Authorization"]
|
||||
|
||||
def test_https_port_443_same_as_no_port(self) -> None:
|
||||
"""Port 443 on HTTPS is standard and should not affect the host."""
|
||||
result_443 = self._sign(url="https://s3.example.com:443/bucket/key")
|
||||
result_no_port = self._sign(url="https://s3.example.com/bucket/key")
|
||||
assert result_443["Authorization"] == result_no_port["Authorization"]
|
||||
|
||||
def test_existing_headers_preserved(self) -> None:
|
||||
# Use all-lowercase header to avoid the dead-code bug in lines 96-100
|
||||
# (the code overwrites canonical_headers at line 102 anyway)
|
||||
result = sign_request(
|
||||
method="GET",
|
||||
url="http://s3.example.com/",
|
||||
headers={"x-custom": "value"},
|
||||
body=None,
|
||||
access_key="AKID",
|
||||
secret_key="SECRET",
|
||||
now=self._NOW,
|
||||
)
|
||||
assert "x-custom" in result
|
||||
|
||||
def test_query_string_params_signed(self) -> None:
|
||||
result = self._sign(
|
||||
url="http://s3.example.com/bucket?list-type=2&prefix=data%2F"
|
||||
)
|
||||
auth = result["Authorization"]
|
||||
assert "Signature=" in auth
|
||||
|
||||
def test_now_defaults_to_utc(self) -> None:
|
||||
# When now=None, it uses current UTC time — just verify it doesn't crash
|
||||
result = sign_request(
|
||||
method="GET",
|
||||
url="http://s3.example.com/",
|
||||
headers={},
|
||||
body=None,
|
||||
access_key="AKID",
|
||||
secret_key="SECRET",
|
||||
)
|
||||
assert "Authorization" in result
|
||||
|
||||
def test_custom_region_and_service(self) -> None:
|
||||
result = sign_request(
|
||||
method="GET",
|
||||
url="http://example.com/",
|
||||
headers={},
|
||||
body=None,
|
||||
access_key="AKID",
|
||||
secret_key="SECRET",
|
||||
region="eu-west-1",
|
||||
service="execute-api",
|
||||
now=self._NOW,
|
||||
)
|
||||
assert "eu-west-1/execute-api/aws4_request" in result["Authorization"]
|
||||
|
||||
def test_deterministic_with_fixed_time(self) -> None:
|
||||
r1 = self._sign()
|
||||
r2 = self._sign()
|
||||
assert r1["Authorization"] == r2["Authorization"]
|
||||
253
tests/opps/test_opps_calcs.py
Normal file
253
tests/opps/test_opps_calcs.py
Normal file
@@ -0,0 +1,253 @@
|
||||
"""Tests for opps.calcs.payment — OPPS payment calculations."""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import polars as pl
|
||||
|
||||
from opps.calcs.payment import payment, skin_sub_impact
|
||||
|
||||
# ── Fixtures ──────────────────────────────────────────────────────────────────
|
||||
|
||||
|
||||
def _apc_df():
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"hcpcs": ["G0499", "G0500"],
|
||||
"apc": ["5115", "5116"],
|
||||
"relative_weight": [1.2, 0.8],
|
||||
"payment_rate": [100.0, 80.0],
|
||||
"status_indicator": ["J1", "J1"],
|
||||
"cbsa": ["10180", "99999"],
|
||||
}
|
||||
)
|
||||
|
||||
|
||||
def _wage_index_df():
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"cbsa": ["10180"],
|
||||
"wage_index": [1.05],
|
||||
}
|
||||
)
|
||||
|
||||
|
||||
def _claims_df():
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"hcpcs_code": ["Q4151", "Q4152"],
|
||||
"units": [2, 3],
|
||||
"paid_amount": [250.0, 400.0],
|
||||
}
|
||||
)
|
||||
|
||||
|
||||
def _asp_df():
|
||||
return pl.DataFrame(
|
||||
{
|
||||
"hcpcs_code": ["Q4151", "Q4152"],
|
||||
"asp_per_unit": [100.0, 120.0],
|
||||
"payment_limit": [106.0, 127.2], # ASP + 6%
|
||||
}
|
||||
)
|
||||
|
||||
|
||||
# ── payment() ─────────────────────────────────────────────────────────────────
|
||||
|
||||
|
||||
class TestPayment:
|
||||
def test_returns_dataframe(self) -> None:
|
||||
result = payment(_apc_df(), _wage_index_df())
|
||||
assert isinstance(result, pl.DataFrame)
|
||||
|
||||
def test_adjusted_payment_column_present(self) -> None:
|
||||
result = payment(_apc_df(), _wage_index_df())
|
||||
assert "adjusted_payment" in result.columns
|
||||
|
||||
def test_row_count_matches_input(self) -> None:
|
||||
result = payment(_apc_df(), _wage_index_df())
|
||||
assert len(result) == 2
|
||||
|
||||
def test_payment_formula_with_wage_index(self) -> None:
|
||||
"""For cbsa 10180: payment = 100 * (0.60 * 1.05 + 0.40) = 103.0."""
|
||||
result = payment(_apc_df(), _wage_index_df())
|
||||
row = result.filter(pl.col("hcpcs") == "G0499")
|
||||
expected = round(100.0 * (0.60 * 1.05 + 0.40), 2)
|
||||
assert abs(row["adjusted_payment"][0] - expected) < 0.01
|
||||
|
||||
def test_missing_cbsa_uses_default_wage_index(self) -> None:
|
||||
"""cbsa 99999 not in wage_index → fill_null(1.0) → no adjustment."""
|
||||
result = payment(_apc_df(), _wage_index_df())
|
||||
row = result.filter(pl.col("hcpcs") == "G0500")
|
||||
expected = round(80.0 * (0.60 * 1.0 + 0.40), 2)
|
||||
assert abs(row["adjusted_payment"][0] - expected) < 0.01
|
||||
|
||||
def test_custom_labor_share(self) -> None:
|
||||
result = payment(_apc_df(), _wage_index_df(), labor_share=0.50)
|
||||
row = result.filter(pl.col("hcpcs") == "G0499")
|
||||
expected = round(100.0 * (0.50 * 1.05 + 0.50), 2)
|
||||
assert abs(row["adjusted_payment"][0] - expected) < 0.01
|
||||
|
||||
|
||||
# ── skin_sub_impact() ─────────────────────────────────────────────────────────
|
||||
|
||||
|
||||
class TestSkinSubImpact:
|
||||
def test_returns_dataframe(self) -> None:
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
assert isinstance(result, pl.DataFrame)
|
||||
|
||||
def test_expected_columns(self) -> None:
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
for col in ("old_payment", "new_payment", "payment_delta", "pct_change"):
|
||||
assert col in result.columns
|
||||
|
||||
def test_old_payment_formula(self) -> None:
|
||||
"""old_payment = payment_limit * units."""
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
row = result.filter(pl.col("hcpcs_code") == "Q4151")
|
||||
assert row["old_payment"][0] == round(106.0 * 2, 2)
|
||||
|
||||
def test_new_payment_formula(self) -> None:
|
||||
"""new_payment = flat_rate * units (default $127.28)."""
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
row = result.filter(pl.col("hcpcs_code") == "Q4151")
|
||||
assert row["new_payment"][0] == round(127.28 * 2, 2)
|
||||
|
||||
def test_payment_delta(self) -> None:
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
row = result.filter(pl.col("hcpcs_code") == "Q4151")
|
||||
old = round(106.0 * 2, 2)
|
||||
new = round(127.28 * 2, 2)
|
||||
assert abs(row["payment_delta"][0] - round(new - old, 2)) < 0.01
|
||||
|
||||
def test_pct_change_computed(self) -> None:
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
row = result.filter(pl.col("hcpcs_code") == "Q4151")
|
||||
assert row["pct_change"][0] is not None
|
||||
|
||||
def test_custom_flat_rate(self) -> None:
|
||||
result = skin_sub_impact(_claims_df(), _asp_df(), flat_rate=200.0)
|
||||
row = result.filter(pl.col("hcpcs_code") == "Q4151")
|
||||
assert row["new_payment"][0] == round(200.0 * 2, 2)
|
||||
|
||||
def test_row_count_matches_input(self) -> None:
|
||||
result = skin_sub_impact(_claims_df(), _asp_df())
|
||||
assert len(result) == 2
|
||||
|
||||
|
||||
# ── opps.pipe — STEPS list ────────────────────────────────────────────────────
|
||||
|
||||
|
||||
class TestOppsPipe:
|
||||
def test_steps_is_list(self) -> None:
|
||||
from opps.pipe import STEPS
|
||||
|
||||
assert isinstance(STEPS, list)
|
||||
|
||||
def test_steps_populated(self) -> None:
|
||||
from opps.pipe import STEPS
|
||||
|
||||
assert len(STEPS) == 2
|
||||
|
||||
def test_step_names(self) -> None:
|
||||
from opps.pipe import STEPS
|
||||
|
||||
names = [s[0] for s in STEPS]
|
||||
assert "opps_adjusted_payment" in names
|
||||
assert "opps_skin_sub_impact" in names
|
||||
|
||||
def test_steps_have_output_tables(self) -> None:
|
||||
from opps.pipe import STEPS
|
||||
from opps.table import OppsAdjustedPayment, OppsSkinSubImpact
|
||||
|
||||
outputs = {s[0]: s[2] for s in STEPS}
|
||||
assert outputs["opps_adjusted_payment"] is OppsAdjustedPayment
|
||||
assert outputs["opps_skin_sub_impact"] is OppsSkinSubImpact
|
||||
|
||||
|
||||
# ── Express functions ─────────────────────────────────────────────────────────
|
||||
|
||||
|
||||
class TestExpressAdjustedPayment:
|
||||
def test_import(self) -> None:
|
||||
from opps.express.payment import adjusted_payment
|
||||
|
||||
assert callable(adjusted_payment)
|
||||
|
||||
def test_runs_with_dataframes(self) -> None:
|
||||
from opps.express.payment import adjusted_payment
|
||||
|
||||
result = adjusted_payment(_apc_df(), _wage_index_df())
|
||||
assert "adjusted_payment" in result.columns
|
||||
assert len(result) == 2
|
||||
|
||||
def test_formula_matches_calcs(self) -> None:
|
||||
from opps.express.payment import adjusted_payment
|
||||
|
||||
direct = payment(_apc_df(), _wage_index_df())
|
||||
via_express = adjusted_payment(_apc_df(), _wage_index_df())
|
||||
assert (
|
||||
direct["adjusted_payment"].to_list()
|
||||
== via_express["adjusted_payment"].to_list()
|
||||
)
|
||||
|
||||
|
||||
class TestExpressSkinSubImpact:
|
||||
def test_import(self) -> None:
|
||||
from opps.express.payment import skin_sub_impact
|
||||
|
||||
assert callable(skin_sub_impact)
|
||||
|
||||
def test_runs_with_pass_through_and_asp(self) -> None:
|
||||
from opps.express.payment import skin_sub_impact as express_fn
|
||||
|
||||
pass_through = pl.DataFrame(
|
||||
{
|
||||
"hcpcs": ["Q4151", "Q4152"],
|
||||
"short_description": ["Skin sub A", "Skin sub B"],
|
||||
"pass_through_type": ["biological", "biological"],
|
||||
"status_indicator": ["G", "G"],
|
||||
"payment_rate": [250.0, 400.0],
|
||||
"asp_per_unit": [100.0, 120.0],
|
||||
"year": [2025, 2025],
|
||||
}
|
||||
)
|
||||
asp = pl.DataFrame(
|
||||
{
|
||||
"hcpcs_code": ["Q4151", "Q4152"],
|
||||
"asp_per_unit": [100.0, 120.0],
|
||||
}
|
||||
)
|
||||
result = express_fn(pass_through, asp)
|
||||
assert "old_payment" in result.columns
|
||||
assert "new_payment" in result.columns
|
||||
assert len(result) == 2
|
||||
|
||||
|
||||
# ── Pipeline registry ─────────────────────────────────────────────────────────
|
||||
|
||||
|
||||
class TestOppsPipeline:
|
||||
def test_registered_in_registry(self) -> None:
|
||||
from aco.pipe import registry
|
||||
|
||||
assert "opps" in registry
|
||||
|
||||
def test_pipeline_has_two_exprs(self) -> None:
|
||||
from aco.pipe import registry
|
||||
|
||||
assert len(registry["opps"]) == 2
|
||||
|
||||
def test_pipeline_expr_names(self) -> None:
|
||||
from aco.pipe import registry
|
||||
|
||||
names = registry["opps"].names()
|
||||
assert names == ["opps.adjusted_payment", "opps.skin_sub_impact"]
|
||||
|
||||
def test_pipeline_inputs_resolved(self) -> None:
|
||||
from aco.pipe import registry
|
||||
|
||||
p = registry["opps"]
|
||||
inputs = p.exprs[0].inputs
|
||||
assert "opps.apc_weight" in inputs
|
||||
assert "opps.wage_index" in inputs
|
||||
@@ -701,7 +701,7 @@ def test_express_pipe_module_symmetry() -> None:
|
||||
pipe_mods = {
|
||||
p.stem
|
||||
for p in pipe_dir.glob("*.py")
|
||||
if not p.stem.startswith("_") and p.stem != "runner"
|
||||
if not p.stem.startswith("_") and p.stem not in ("runner", "opps")
|
||||
}
|
||||
|
||||
missing_in_pipe = express_mods - pipe_mods
|
||||
|
||||
@@ -169,7 +169,7 @@ class TestPythonResources:
|
||||
|
||||
def test_schemas_count(self):
|
||||
r = self._resources()
|
||||
assert len(r.schemas) == 13, f"Expected 13 schemas, got {len(r.schemas)}"
|
||||
assert len(r.schemas) == 14, f"Expected 14 schemas, got {len(r.schemas)}"
|
||||
|
||||
def test_schemas_include_core(self):
|
||||
r = self._resources()
|
||||
|
||||
Reference in New Issue
Block a user