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zot: top-level module for Zotero sync, article retrieval, and evidence management #247

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opened 2026-03-25 18:22:40 +00:00 by kert · 0 comments
kert commented 2026-03-25 18:22:40 +00:00
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Objective

New top-level zot namespace module consolidating Zotero integration.

Core functions

  • zot.sync.push(items, collection) — push bib items to Zotero with proper key validation, creator handling, journalArticle typing
  • zot.sync.pull() — pull from Zotero back to bib.sqlite
  • zot.fetch.pubmed(query) — PubMed E-utilities search + efetch
  • zot.fetch.snowball(seeds) — citation chasing via elink
  • zot.fetch.fulltext(items) — full-text PDF retrieval
  • zot.mesh.tag(items) — MeSH term tagging
  • zot.enrich.coi(items) — COI/funding detection
  • zot.enrich.entities(items) — manufacturer entity tagging

Architecture

  • src/zot/ skinny package, depends on bib + conf
  • CLI: stack zot sync, stack zot search, stack zot fetch
  • Replaces ad-hoc scripts in dev/scripts/
  • Separate PR/branch
## Objective New top-level `zot` namespace module consolidating Zotero integration. ### Core functions - `zot.sync.push(items, collection)` — push bib items to Zotero with proper key validation, creator handling, journalArticle typing - `zot.sync.pull()` — pull from Zotero back to bib.sqlite - `zot.fetch.pubmed(query)` — PubMed E-utilities search + efetch - `zot.fetch.snowball(seeds)` — citation chasing via elink - `zot.fetch.fulltext(items)` — full-text PDF retrieval - `zot.mesh.tag(items)` — MeSH term tagging - `zot.enrich.coi(items)` — COI/funding detection - `zot.enrich.entities(items)` — manufacturer entity tagging ### Architecture - `src/zot/` skinny package, depends on bib + conf - CLI: `stack zot sync`, `stack zot search`, `stack zot fetch` - Replaces ad-hoc scripts in `dev/scripts/` - Separate PR/branch
kert closed this issue 2026-03-25 18:23:32 +00:00
kert changed title from zot: top-level module for Zotero sync and evidence management to zot: top-level module for Zotero sync, article retrieval, and evidence management 2026-03-25 18:23:32 +00:00
kert reopened this issue 2026-03-25 18:23:32 +00:00
kert closed this issue 2026-04-10 01:49:03 +00:00
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Reference: homelab/stack#247
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