docs(cli): regenerate stack pfs cpt-ingest and stack bib import-zotero pages (F7)
Ran docs/scripts/extract_cli.py. Both commands existed with no CLI doc page at all (import-zotero since #687, cpt-ingest from this branch's earlier commits). Also refreshed pfs.md and bib.md (group pages whose Commands table now lists them) and pfs-families.md (the new --verbose option, F5's minor). The generator does a full rmtree+regenerate and the repo's docs/docs/cli/ tree was already stale for several unrelated command groups (mail, comments, lake, db, docs, api, llm, zot, prisma, most of bib's own long-standing subcommands) — left untouched here, out of scope for this fix wave; only the files this branch's commands actually affect are included.
This commit is contained in:
kert
38
docs/docs/cli/bib-import-zotero.md
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38
docs/docs/cli/bib-import-zotero.md
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---
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title: stack bib import-zotero
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sidebar_position: 23
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---
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# `stack bib import-zotero`
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```
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Usage: stack bib import-zotero [OPTIONS]
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Pull a Zotero collection's book items (with files) into bib.
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The reverse of ``sync-zotero``: reads the Zotero SQLite database
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read-only and upserts each book as a bib ``Source`` item (dedup by
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URL), copying its attachment file(s) into bib storage — an ordinary
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corpus document like any other, indexed like everything else in
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bib. ``llm:skip`` is available as a generic opt-out for material
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that should not be embedded (see ``llm.source.iter_corpus_refs``)
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— e.g. a scratch export or a duplicate scan — but it's never added
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automatically here; pass ``--tag llm:skip`` explicitly if it
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applies.
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╭─ Options ────────────────────────────────────────────────────────────────────╮
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│ * --collection TEXT Zotero collection name to pull │
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│ from. │
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│ [required] │
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│ --with-files --no-with-files Only import items that have at │
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│ least one attachment file. │
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│ [default: no-with-files] │
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│ --only TEXT Title substring filter │
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│ (case-insensitive). │
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│ --tag TEXT Tag every imported item with │
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│ this. Repeat for multiple. │
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│ --dry-run Report what would happen without │
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│ writing. │
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│ --help Show this message and exit. │
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╰──────────────────────────────────────────────────────────────────────────────╯
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```
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@@ -17,5 +17,40 @@ Usage: stack bib [OPTIONS] COMMAND [ARGS]...
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│ sync Apply col: tags as DuckDB column comments. │
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│ sync Apply col: tags as DuckDB column comments. │
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│ tag List or search bibliography tags. │
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│ tag List or search bibliography tags. │
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│ query Search the bibliography store. │
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│ query Search the bibliography store. │
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│ discover-pfs-rules Walk the Federal Register API for every PFS rule │
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│ since a date. │
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│ fetch-docket-comments Walk one docket's comments from its stored watermark; │
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│ upsert as Source items. │
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│ fetch-pfs-comments Discover every PFS proposed rule since *since* and │
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│ pull new comments │
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│ on each docket from its stored watermark. │
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│ ingest-mail Pull UNSEEN mail from a mailbox via IMAPS, upsert as │
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│ bib Sources. │
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│ backfill-comments Enrich every reg-gov comment stub with body + │
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│ attachments. │
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│ ingest-iom Crawl the CMS IOM index and upsert every chapter as a │
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│ Manual. │
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│ attach-iom Download the PDF for every Manual and attach it to │
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│ the record. │
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│ watch-iom Poll the CMS futurepdf.pdf schedule; attach if │
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│ changed. │
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│ import-zotero Pull a Zotero collection's book items (with files) │
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│ into bib. │
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│ sync-zotero Push bib items (and their attachments) to the Zotero │
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│ database. │
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│ ingest-oig Crawl OIG Compliance Program Guidance + fraud alerts │
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│ indexes. │
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│ attach-oig Download and attach the PDF/HTML for every OIG │
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│ guidance record. │
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│ refresh-oig One-shot: ingest-oig → attach-oig → sync-zotero (OIG │
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│ tag). │
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│ refresh-iom One-shot: ingest-iom → watch-iom → attach-iom → │
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│ sync-zotero. │
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│ fr-grab Grab federalregister.gov paragraph/page anchor maps │
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│ into bib (#634). │
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│ fr-jump Resolve an FR citation to its web jump link (#637); │
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│ optionally place it. │
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│ cfr-jump Bidirectional CFR cite ↔ eCFR URL (#640); optionally │
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│ place the link. │
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╰──────────────────────────────────────────────────────────────────────────────╯
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╰──────────────────────────────────────────────────────────────────────────────╯
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```
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```
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21
docs/docs/cli/pfs-cpt-ingest.md
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docs/docs/cli/pfs-cpt-ingest.md
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---
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title: stack pfs cpt-ingest
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sidebar_position: 69
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---
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# `stack pfs cpt-ingest`
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```
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Usage: stack pfs cpt-ingest [OPTIONS]
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Parse CPT EPUB editions into pfs.cpt_section/cpt_code/cpt_instruction/
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cpt_reference/cpt_crosswalk/cpt_list (docs/superpowers/specs/
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2026-09-09-cpt-canonical-schema-design.md §3).
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╭─ Options ────────────────────────────────────────────────────────────────────╮
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│ --edition INTEGER CPT edition year to ingest (repeatable). │
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│ --all Every CPT EPUB edition found in bib (source:ama). │
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│ --dry-run Parse and report counts; write nothing. │
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│ --help Show this message and exit. │
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╰──────────────────────────────────────────────────────────────────────────────╯
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```
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---
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---
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title: stack pfs families
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title: stack pfs families
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sidebar_position: 65
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sidebar_position: 67
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---
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---
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# `stack pfs families`
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# `stack pfs families`
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@@ -12,6 +12,7 @@ Usage: stack pfs families [OPTIONS]
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╭─ Options ────────────────────────────────────────────────────────────────────╮
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╭─ Options ────────────────────────────────────────────────────────────────────╮
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│ --write │
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│ --write │
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│ --verbose Print every family's members, not just the summary. │
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│ --help Show this message and exit. │
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│ --help Show this message and exit. │
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╰──────────────────────────────────────────────────────────────────────────────╯
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╰──────────────────────────────────────────────────────────────────────────────╯
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```
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```
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@@ -1,6 +1,6 @@
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---
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---
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title: stack pfs
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title: stack pfs
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sidebar_position: 62
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sidebar_position: 64
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---
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---
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# `stack pfs`
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# `stack pfs`
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@@ -18,7 +18,12 @@ Usage: stack pfs [OPTIONS] COMMAND [ARGS]...
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│ queue). │
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│ queue). │
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│ lineage Timeline of a code: RVU-file diffs and FR paragraphs, │
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│ lineage Timeline of a code: RVU-file diffs and FR paragraphs, │
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│ cross-checked. │
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│ cross-checked. │
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│ families Derive families from pfs.code_element / pfs.code_event / pfs.rvu. │
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│ families Derive families from pfs.code_element / pfs.code_event / │
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│ pfs.rvu. │
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│ review Element lines the classifier could not place. │
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│ review Element lines the classifier could not place. │
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│ cpt-ingest Parse CPT EPUB editions into │
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│ pfs.cpt_section/cpt_code/cpt_instruction/ │
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│ cpt_reference/cpt_crosswalk/cpt_list (docs/superpowers/specs/ │
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│ 2026-09-09-cpt-canonical-schema-design.md §3). │
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╰──────────────────────────────────────────────────────────────────────────────╯
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╰──────────────────────────────────────────────────────────────────────────────╯
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```
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```
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