Merge P36: CY2026 PFS proposed rule — capture, ingest, APM analysis
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This commit is contained in:
kert
2026-08-13 16:28:56 -04:00
24 changed files with 2828 additions and 148 deletions

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@@ -308,7 +308,7 @@
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@@ -346,6 +346,46 @@
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@@ -0,0 +1,230 @@
"""Fetch + register the CY2026 PFS NPRM (proposed rule) addenda.
Downloads the CMS-1832-P "CY 2026 PFS Proposed Rule Addenda" ZIP, which
contains Addendum B (proposed RVUs by HCPCS), and optionally registers
Addendum B in bib against the CY2026 PFS NPRM rule item (2KVJ2HKX),
tagged ``sup:2026_PFS_NPRM`` so Task 5's loader can discover the
*proposed* Addendum B without touching final-rule files (which carry
``sup:2026_PFS_FR`` — the two namespaces must never collide).
Source page (CMS-1832-P detail page — the canonical
``.../pfs-federal-regulation-notices/cms-1832-p`` URL 404s; this is the
current path found via the federal-regulation-notices listing):
https://www.cms.gov/medicare/payment/fee-schedules/physician/federal-regulation-notices/cms-1832-p
Download link text on that page: "CY 2026 PFS Proposed Rule Addenda -
Updated 07/29/2025" (the URL path segment literally contains
"07/29/2025" for the update-date suffix — that's CMS's own href, not a
typo here).
Usage:
uv run python dev/scripts/fetch_nprm_addenda.py --dry-run
uv run python dev/scripts/fetch_nprm_addenda.py
uv run python dev/scripts/fetch_nprm_addenda.py --register
"""
from __future__ import annotations
import argparse
import re
import zipfile
from pathlib import Path
from typing import Any
import httpx
ROOT = Path(__file__).resolve().parents[2]
DEST_DIR = ROOT / "data" / "cms" / "pfs_nprm" / "2026"
USER_AGENT = (
"Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 "
"(KHTML, like Gecko) Chrome/122.0.0.0 Safari/537.36"
)
# CY2026 PFS Proposed Rule (CMS-1832-P) Addenda ZIP — resolved from the
# CMS-1832-P detail page:
# https://www.cms.gov/medicare/payment/fee-schedules/physician/federal-regulation-notices/cms-1832-p
ADDENDA_URL = (
"https://www.cms.gov/files/zip/"
"cy-2026-pfs-proposed-rule-addenda-updated-07/29/2025.zip"
)
ADDENDA_ZIP_NAME = "cy2026_pfs_nprm_addenda.zip"
ADDENDUM_B_RE = re.compile(r"(?i)addendum[_ ]?b")
RULE_ITEM_KEY = "2KVJ2HKX"
ADDENDUM_B_TITLE = "CY2026 PFS NPRM Addendum B (proposed RVUs)"
REGISTER_TAGS = ["sup:2026_PFS_NPRM", "module:pfs", "file:rvu", "year:2026"]
def download_zip(dest: Path, *, retries: int = 3) -> bool:
"""Download the addenda ZIP if it doesn't already exist."""
import time
if dest.exists():
print(f" EXISTS {dest.name}")
return True
print(f" GET {dest.name} ...", end="", flush=True)
for attempt in range(1, retries + 1):
try:
resp = httpx.get(
ADDENDA_URL,
headers={"User-Agent": USER_AGENT},
timeout=120,
follow_redirects=True,
)
if resp.status_code == 200:
dest.write_bytes(resp.content)
print(f" {len(resp.content) / 1024 / 1024:.1f} MB")
return True
if resp.status_code < 500 or attempt == retries:
print(f" HTTP {resp.status_code}")
return False
except Exception as e:
if attempt == retries:
print(f" ERROR: {e}")
return False
time.sleep(2 * attempt)
return False
def extract_zip(zip_path: Path, dest_dir: Path) -> list[Path]:
"""Unzip into dest_dir. Idempotent — extraction overwrites in place."""
with zipfile.ZipFile(zip_path) as zf:
names = [n for n in zf.namelist() if not n.endswith("/")]
zf.extractall(dest_dir)
return sorted(dest_dir / n for n in names)
def find_addendum_b(files: list[Path]) -> Path | None:
"""Find the extracted file whose name matches Addendum B."""
candidates = [
f
for f in files
if ADDENDUM_B_RE.search(f.name) and f.suffix.lower() in (".xlsx", ".csv")
]
if not candidates:
return None
# Prefer .xlsx over .csv if both are present.
candidates.sort(key=lambda f: f.suffix.lower() != ".xlsx")
return candidates[0]
def preview_addendum_b(path: Path) -> None:
"""Print the header row (and a couple of data rows) for verification."""
import polars as pl
if path.suffix.lower() == ".xlsx":
df = pl.read_excel(path, read_options={"header_row": None})
else:
df = pl.read_csv(path, n_rows=5, has_header=False)
print(f" columns/first rows of {path.name}:")
with pl.Config(tbl_cols=-1, tbl_width_chars=200):
print(df.head(5))
def _existing_attachment(store: Any, item_key: str, filename: str) -> str | None:
"""Return the attachment key on item_key whose filename matches, if any."""
con = store._con() # noqa: SLF001 — same pattern as bib/oig.py, bib/iom.py
row = con.execute(
"""SELECT a.key FROM attachments a
JOIN items i ON a.item_id = i.id
WHERE i.key = ? AND a.filename = ?""",
(item_key, filename),
).fetchone()
return row["key"] if row else None
def register(addendum_b_path: Path) -> None:
"""Attach Addendum B to the NPRM rule item and tag it.
Idempotent: if an attachment with the Addendum B title already exists
on the rule item, skip attach_file (which has no dedup of its own and
would otherwise create a duplicate on every --register re-run) and
only (re-)apply the tags, which are already idempotent via add_tag's
INSERT OR IGNORE.
"""
from conf import connect
store = connect.bib()
existing_key = _existing_attachment(store, RULE_ITEM_KEY, ADDENDUM_B_TITLE)
if existing_key is not None:
print(
f"SKIP attach — {RULE_ITEM_KEY} already has an attachment titled "
f"{ADDENDUM_B_TITLE!r} (key {existing_key})"
)
else:
att_key = store.attach_file(
RULE_ITEM_KEY, addendum_b_path, title=ADDENDUM_B_TITLE
)
con = store._con() # noqa: SLF001 — same pattern as bib/oig.py, bib/iom.py
row = con.execute(
"SELECT storage_path FROM attachments WHERE key = ?", (att_key,)
).fetchone()
storage_path = row["storage_path"] if row else "<unknown>"
print(f"Attached {addendum_b_path.name} (key {att_key}) -> {storage_path}")
for tag in REGISTER_TAGS:
store.add_tag(RULE_ITEM_KEY, tag)
print(f"Tagged {RULE_ITEM_KEY} with: {', '.join(REGISTER_TAGS)}")
item = store.get(RULE_ITEM_KEY)
print(f"Current tags on {RULE_ITEM_KEY}: {item.tags}")
def main() -> None:
parser = argparse.ArgumentParser(
description="Fetch + register the CY2026 PFS NPRM addenda"
)
parser.add_argument(
"--dry-run",
action="store_true",
help="Print what would be downloaded/extracted without doing it.",
)
parser.add_argument(
"--register",
action="store_true",
help="After fetching, attach Addendum B to bib item "
f"{RULE_ITEM_KEY} and apply the {', '.join(REGISTER_TAGS)} tags.",
)
args = parser.parse_args()
zip_dest = DEST_DIR / ADDENDA_ZIP_NAME
if args.dry_run:
print(f"Would GET {ADDENDA_URL}")
print(f"Would save {zip_dest}")
print(f"Would extract into {DEST_DIR}")
if args.register:
print(
f"Would attach Addendum B to {RULE_ITEM_KEY} "
f"and tag with: {', '.join(REGISTER_TAGS)}"
)
return
DEST_DIR.mkdir(parents=True, exist_ok=True)
if not download_zip(zip_dest):
raise SystemExit(f"Failed to download {ADDENDA_URL}")
files = extract_zip(zip_dest, DEST_DIR)
print(f"\nExtracted {len(files)} files to {DEST_DIR}:")
for f in files:
size_kb = f.stat().st_size / 1024
print(f" {f.relative_to(DEST_DIR)} ({size_kb:.0f} KB)")
addendum_b = find_addendum_b(files)
if addendum_b is None:
raise SystemExit(
"Could not find an Addendum B file (pattern "
f"{ADDENDUM_B_RE.pattern!r}) among extracted files."
)
print(f"\nAddendum B: {addendum_b.relative_to(DEST_DIR)}")
preview_addendum_b(addendum_b)
if args.register:
print()
register(addendum_b)
if __name__ == "__main__":
main()

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@@ -33,10 +33,19 @@ def main() -> int:
action="store_true",
help="skip publishing to the DuckLake lakehouse",
)
parser.add_argument(
"--nprm",
action="store_true",
help="also load the NPRM Addendum B proposed RVUs into pfs.rvu_proposed",
)
args = parser.parse_args()
from cms import ingest_log
from conf.connect import duckdb_batch, publish_replica
from pfs.pipe import load_all
from pfs.rules import RULES
run_id = ingest_log.new_run_id()
print("Ingesting CMS PFS files into DuckDB ...")
with duckdb_batch("aco") as con:
@@ -44,6 +53,31 @@ def main() -> int:
print("\n--- PFS tables ---")
for name, info in sorted(summary.items()):
print(f" pfs.{name:24s}: {info}")
ingest_log.log_ingest(
con,
module="pfs",
table_name=name,
rows=info.get("rows", 0) if isinstance(info, dict) else 0,
run_id=run_id,
)
if args.nprm:
from pfs.nprm import load_rvu_proposed
print("\n--- NPRM Addendum B (proposed RVUs) ---")
nprm_out = load_rvu_proposed(con)
print(f" pfs.rvu_proposed : {nprm_out}")
ingest_log.log_ingest(
con,
module="pfs",
table_name="pfs.rvu_proposed",
rows=nprm_out["rows"],
source_file=nprm_out["source_file"],
rule_id="CMS-1832-P",
fr_citation=RULES[2026].proposed.federal_register_citation,
pincite_key="2KVJ2HKX",
run_id=run_id,
)
replica = publish_replica("aco")
print(f"replica → {replica}")
@@ -52,7 +86,7 @@ def main() -> int:
print("\n--- Publishing to DuckLake ---")
import _lake
_lake.publish_lake(("pfs",))
_lake.publish_lake(("pfs", "cms"))
print("\nDone.")
return 0

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@@ -30,8 +30,10 @@ SCHEMAS: dict[str, tuple[str, ...]] = {
"medical_supply",
"physician_work_time",
"rvu",
"rvu_proposed",
"zip_carrier_locality",
),
"cms": ("ingest_log",),
}

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@@ -180,3 +180,49 @@ Dependency order: 1–3 independent; 4 needs 2; 5 needs 3+4+7; 6 needs 2;
- MIPS scoring/measure modeling beyond the QP/Advanced-APM parameters above.
- Cloud LLM usage — the llm module stays local-only per project policy.
- Modeling every NPRM addendum; only Addendum B (RVUs) is tabled.
## P36 build outcomes (2026-08-13)
Issues #588–#597, milestone P36 (17 commits, 4a9be6f..a444d75, branch
`p36-cy2026-rule`). Deviations and measurements vs the design:
- **Comment farm was already complete** — the design's "only ~2,905 of
14,092 extracted" understated prior work: all 2,905 attachment-bearing
comments had extractions; the remaining ~11.2k are body-only (abstract
fallback covers them), and the whole corpus (164k comments, 726,620
chunks incl. 62,486 for CMS-2025-0304) was already embedded post-P33.
#596 reduced to rule-text indexing.
- **Rules collection**: 5,769 chunks (2,254→2,208 NPRM CMS-1832-P,
3,611→3,561 final CMS-1832-F) after an inline-HTML-strip fix round and
force reindex; final-rule bib item gained `cms-rule:CMS-1832-F`.
- **pfs.rvu_proposed**: 14,169 rows (NPRM Addendum B), in aco.duckdb +
replica + DuckLake; `cms.ingest_log` provenance (18 rows/2 runs) with
sha256, FR citation, pincite. Column names deviate from `pfs.rvu`
(`modifier`/`mod`, `nonfac_pe_rvu`/`non_fac_pe_rvu`) — follow-up #607.
- **CY2026 NPRM parameters** (all source-verified at 90 FR 32352 et seq.):
proposed CF 33.4209 non-QP / 33.5875 QP, anesthesia 20.5728/20.6754,
BN adjustor 1.0055, telehealth originating-site fee $31.85, comment
close 2025-09-12.
- **qpp module**: QP thresholds 75%/50% (partial 50%/35% — patient-count
value is a disclosed inference), revenue nominal-risk standard 8%
(414.1415(c)(3)(i)(A), established 83 FR / 2018-24170); the
benchmark-based standard (c)(3)(i)(B) is stated nowhere in the corpus
as a bare percentage → `None` with notes. APM incentive sunset and the
first-year QP/non-QP CF split (payment year 2026) encoded with
citations at 90 FR 49928/49979–49980.
- **Citation correction found by final review**: `RULES[2026]`'s
final-rule citation had been "90 FR 101174" — that is the *OPPS* final
rule's citation; the PFS final rule is **90 FR 49266–50481** (CFs at
49961). Corrected in registry + notebook (a444d75). Design note: the
spec itself restated the wrong citation as current state; future rule
cycles should re-verify pre-existing registry citations against newly
captured text.
- **Interstitials landed on the branch**: #598 (test poisoned global
polars.DataFrame → duckdb replacement-scan cache corruption; full
suite 14,023 green post-fix), #599 (stale .git/hooks copies removed),
CVE bumps aiohttp 3.14.3 / pyasn1 0.6.4 / cryptography 50.0.0
(#581–#587 closed with per-CVE exploitability rationale).
- **Notebook**: `notebooks/cy2026_pfs_proposed_rule.py`, 5 sections, all
values registry/lake-sourced (thresholds interpolated after review
fix), 18/18 headless integration green. CMS Table 92 (specialty
impact) is a scanned graphic → clearly-labeled CPT-range proxy.

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@@ -0,0 +1,783 @@
import marimo
__generated_with = "0.23.1"
app = marimo.App(width="medium")
@app.cell(hide_code=True)
def _():
import marimo as mo
return (mo,)
@app.cell(hide_code=True)
def _(mo):
mo.md("""
# CY2026 PFS Proposed Rule — Financial Changes & Advanced APM
CMS's CY2026 Physician Fee Schedule rulemaking is unusual: the NPRM
(CMS-1832-P, 90 FR 32352, July 16, 2025) proposed the **first-ever
split conversion factor** — separate dollar amounts for clinicians who
qualify as Advanced APM Participants (QPs) versus everyone else — and
the Final Rule (90 FR 49266) changed several of those numbers again
before taking effect.
**Mechanism:** MACRA 2015 (section 1848(d)(20) of the Act) sets two
statutory annual updates starting payment year 2026 — +0.75%/yr for
the qualifying-APM (QP) conversion factor, +0.25%/yr for everyone
else — on top of a one-time 2.50% increase and the usual budget
neutrality adjustment. This notebook walks the CF from CY2025 through
the NPRM to the Final Rule, quantifies which HCPCS codes moved the
most between the proposed and final RVU tables, and lays out what
Advanced APM (QP) status is worth in dollars for CY2026.
**What this means:** every number below is read live from
`pfs.rules.RULES` / `qpp.QPP` (the repo's rule registries) and the
`pfs`/`cms` DuckLake schemas — nothing here is a hard-coded figure.
All dollar figures use **national, GPCI-unadjusted RVUs (GPCI = 1.0)**
— a deliberate scope simplification, disclosed once here rather than
on every figure; real payment varies by locality via `pfs.gpci`,
which this notebook does not join.
""")
return
@app.cell(hide_code=True)
def _():
import altair as alt
import polars as pl
from conf import connect
from pfs.rules import RULES
from qpp import QPP, for_payment_year
connect.theme()
# connect.theme() puts assets/ on sys.path — reuse the HTI-5 design
# tokens directly instead of re-typing hex literals for the gain/loss
# diverging pair used in Sections 2-3.
from fhirworx import AMBER, TEAL
# PFS reference data lives in the DuckLake lakehouse (M5, #514) —
# notebooks connect read-only.
con = connect.ducklake()
def q(sql):
return con.execute(sql).pl()
return AMBER, QPP, RULES, TEAL, alt, con, for_payment_year, pl, q
# ── 1. The conversion-factor walk ─────────────────────────────────────
@app.cell(hide_code=True)
def _(mo):
mo.md("""
## 1. The Conversion Factor Walk — CY2025 → NPRM → Final Rule
CY2026 is the first year the PFS publishes **four** conversion
factors at once: a standard and an anesthesia CF, each split into a
qualifying-APM (QP) and nonqualifying-APM (non-QP) track. The chart
below places every published value — CY2025's single CF, the NPRM's
proposed values, and the Final Rule's finalized values — on one
timeline.
""")
return
@app.cell(hide_code=True)
def _(RULES, pl):
_cy25 = RULES[2025]
_cy26 = RULES[2026]
_prop = _cy26.proposed
_rows = [
{"vintage": "CY2025 Final", "family": "Standard", "track": "Non-QP", "cf": _cy25.conversion_factor},
{"vintage": "CY2026 Proposed", "family": "Standard", "track": "Non-QP", "cf": _prop.conversion_factor},
{"vintage": "CY2026 Final", "family": "Standard", "track": "Non-QP", "cf": _cy26.conversion_factor},
{"vintage": "CY2026 Proposed", "family": "Standard", "track": "QP", "cf": _prop.cf_qp},
{"vintage": "CY2026 Final", "family": "Standard", "track": "QP", "cf": _cy26.cf_qp},
{"vintage": "CY2026 Proposed", "family": "Anesthesia", "track": "Non-QP", "cf": _prop.anesthesia_cf},
{"vintage": "CY2026 Final", "family": "Anesthesia", "track": "Non-QP", "cf": _cy26.anesthesia_cf},
{"vintage": "CY2026 Proposed", "family": "Anesthesia", "track": "QP", "cf": _prop.anesthesia_cf_qp},
# NOTE: RULES[2026].anesthesia_cf models the non-QP anesthesia CF
# only — a final QP anesthesia CF is not yet captured in the
# registry (see pfs.rules module docstring), so that bar is
# deliberately omitted rather than guessed.
]
cf_walk = pl.DataFrame(_rows)
cf_walk
return (cf_walk,)
@app.cell(hide_code=True)
def _(alt, cf_walk, mo):
_vintage_order = ["CY2025 Final", "CY2026 Proposed", "CY2026 Final"]
_track_domain = ["Non-QP", "QP"]
cf_chart = (
alt.Chart(cf_walk.to_pandas())
.mark_bar()
.encode(
x=alt.X("vintage:N", title=None, sort=_vintage_order),
xOffset=alt.XOffset("track:N", sort=_track_domain),
y=alt.Y("cf:Q", title="Conversion factor ($/RVU)", scale=alt.Scale(zero=False)),
color=alt.Color("track:N", title="Track", scale=alt.Scale(domain=_track_domain)),
tooltip=["vintage", "family", "track", alt.Tooltip("cf:Q", format="$.4f")],
)
.properties(width=260, height=280)
.facet(column=alt.Column("family:N", title=None))
.resolve_scale(y="independent")
.properties(title="CY2026 PFS Conversion Factors — Proposed vs. Final")
)
mo.vstack(
[
cf_chart,
mo.md("""
*Anesthesia QP (final) is not shown — the Final Rule did not
restate a separate QP anesthesia CF in a form captured by the
`pfs.rules` registry yet.*
**Sources:** CY2025 — 89 FR 98452. CY2026 NPRM — 90 FR 32352
(CMS-1832-P). CY2026 Final Rule — 90 FR 49266.
"""),
]
)
return
@app.cell(hide_code=True)
def _(mo):
mo.md("""
### Budget-neutrality adjustor decomposition
CMS's own NPRM narrative (90 FR 32802) attributes the CY2026 CF
change to three multiplicative pieces: a one-time +2.50% statutory
increase, the +0.25%/+0.75% nonqualifying/qualifying-APM annual
updates, and the budget-neutrality (BN) adjustor. Compounding those
stated percentages against the CY2025 CF reproduces the registry's
actual proposed/final values to within rounding — a useful
cross-check that the registry's transcription is internally
consistent with CMS's narrative.
""")
return
@app.cell(hide_code=True)
def _(RULES, mo, pl):
_cy25_cf = RULES[2025].conversion_factor
_cy26 = RULES[2026]
_prop = _cy26.proposed
# CMS's own stated CF-update components (90 FR 32802) — a one-time
# statutory increase plus the MACRA 2015 sec. 1848(d)(20) annual
# updates. NONE of these three percentages is a field anywhere in
# `pfs.rules` or `qpp` — there is nothing to attribute-access. They
# are kept as literals ONLY because CMS's narrative states them as
# bare numbers, not derived from any other registry value; this is a
# cited transcription of that narrative, not a second source of
# truth for `budget_neutrality_adjustor` or the CFs themselves
# (both of which — `bn_adjustor` / `registry_cf` below — ARE read
# live from the registry).
_ONE_TIME_INCREASE_MULT = 1.0250 # +2.50% single-year statutory increase, 90 FR 32802
_ANNUAL_UPDATE_MULT = {
"Non-QP": 1.0025, # +0.25%/yr nonqualifying-APM update, 90 FR 32802
"QP": 1.0075, # +0.75%/yr qualifying-APM update, 90 FR 32802
}
def _reconstruct(track, bn_adjustor):
return _cy25_cf * _ONE_TIME_INCREASE_MULT * _ANNUAL_UPDATE_MULT[track] * bn_adjustor
_bn_rows = [
{
"vintage": "CY2026 Proposed",
"track": "Non-QP",
"one_time_mult": _ONE_TIME_INCREASE_MULT,
"annual_update_mult": _ANNUAL_UPDATE_MULT["Non-QP"],
"bn_adjustor": _prop.budget_neutrality_adjustor,
"reconstructed_cf": round(_reconstruct("Non-QP", _prop.budget_neutrality_adjustor), 4),
"registry_cf": _prop.conversion_factor,
},
{
"vintage": "CY2026 Proposed",
"track": "QP",
"one_time_mult": _ONE_TIME_INCREASE_MULT,
"annual_update_mult": _ANNUAL_UPDATE_MULT["QP"],
"bn_adjustor": _prop.budget_neutrality_adjustor,
"reconstructed_cf": round(_reconstruct("QP", _prop.budget_neutrality_adjustor), 4),
"registry_cf": _prop.cf_qp,
},
{
"vintage": "CY2026 Final",
"track": "Non-QP",
"one_time_mult": _ONE_TIME_INCREASE_MULT,
"annual_update_mult": _ANNUAL_UPDATE_MULT["Non-QP"],
"bn_adjustor": _cy26.budget_neutrality_adjustor,
"reconstructed_cf": round(_reconstruct("Non-QP", _cy26.budget_neutrality_adjustor), 4),
"registry_cf": _cy26.conversion_factor,
},
{
"vintage": "CY2026 Final",
"track": "QP",
"one_time_mult": _ONE_TIME_INCREASE_MULT,
"annual_update_mult": _ANNUAL_UPDATE_MULT["QP"],
"bn_adjustor": _cy26.budget_neutrality_adjustor,
"reconstructed_cf": round(_reconstruct("QP", _cy26.budget_neutrality_adjustor), 4),
"registry_cf": _cy26.cf_qp,
},
]
bn_decomp = pl.DataFrame(_bn_rows).with_columns(
(pl.col("reconstructed_cf") - pl.col("registry_cf")).abs().round(4).alias("abs_diff")
)
mo.vstack(
[
bn_decomp,
mo.md(f"""
`reconstructed_cf = CY2025_CF × one_time_mult × annual_update_mult × bn_adjustor`
— `bn_adjustor` and `registry_cf` are read live from
`RULES[2026]` / `RULES[2026].proposed`. `one_time_mult`
({_ONE_TIME_INCREASE_MULT}) and `annual_update_mult`
({_ANNUAL_UPDATE_MULT["Non-QP"]} non-QP /
{_ANNUAL_UPDATE_MULT["QP"]} QP) are **cited transcriptions of
CMS's NPRM narrative (90 FR 32802)**, not registry fields —
no field in `pfs.rules` or `qpp` models the 2.50%/0.25%/0.75%
statutory update components individually, only their combined
effect on `conversion_factor` / `cf_qp`.
"""),
]
)
return
# ── 2. RVU-level deltas ────────────────────────────────────────────────
@app.cell(hide_code=True)
def _(mo):
mo.md("""
## 2. RVU-Level Deltas — Which HCPCS Codes Move the Most
`pfs.rvu_proposed` (14,169 rows as of this ingest, CMS-1832-P) is
compared against `pfs.rvu` for CY2025 (pre-rule baseline) and CY2026
(what actually got finalized). Both `pfs.rvu` and `pfs.rvu_proposed`
are deduplicated to one row per HCPCS base code (no modifier),
`status_code = 'A'` (actively priced), and — for the proposed table
specifically — a non-null non-facility PE RVU, since ~29% of
`pfs.rvu_proposed` rows (as of this ingest) carry a null
non-facility *or* facility PE RVU (CMS's Addendum B only populates
the setting a code is actually priced in).
""")
return
@app.cell(hide_code=True)
def _(q):
rvu_delta_raw = q("""
WITH proposed AS (
SELECT hcpcs, description, work_rvu, nonfac_pe_rvu, mp_rvu,
work_rvu + nonfac_pe_rvu + mp_rvu AS total_nf_rvu,
CASE
WHEN hcpcs BETWEEN '99201' AND '99499' THEN 'E/M'
WHEN hcpcs BETWEEN '10000' AND '19999' THEN 'Integumentary'
WHEN hcpcs BETWEEN '20000' AND '29999' THEN 'Musculoskeletal'
WHEN hcpcs BETWEEN '30000' AND '39999' THEN 'Resp/Cardiovascular'
WHEN hcpcs BETWEEN '40000' AND '49999' THEN 'Digestive'
WHEN hcpcs BETWEEN '50000' AND '59999' THEN 'Urinary/Genital'
WHEN hcpcs BETWEEN '60000' AND '69999' THEN 'Endocrine/Nervous'
WHEN hcpcs BETWEEN '70000' AND '79999' THEN 'Radiology'
WHEN hcpcs BETWEEN '80000' AND '89999' THEN 'Path/Lab'
WHEN hcpcs BETWEEN '90000' AND '99199' THEN 'Medicine'
WHEN hcpcs LIKE 'G%' THEN 'G-codes'
ELSE 'Other'
END AS category
FROM pfs.rvu_proposed
WHERE (modifier IS NULL OR modifier = '')
AND status_code = 'A'
AND nonfac_pe_rvu IS NOT NULL
QUALIFY row_number() OVER (PARTITION BY hcpcs ORDER BY hcpcs) = 1
),
final_2025 AS (
SELECT hcpcs, work_rvu + non_fac_pe_rvu + mp_rvu AS total_nf_rvu
FROM pfs.rvu
WHERE year = 2025 AND (mod IS NULL OR mod = '') AND status_code = 'A'
QUALIFY row_number() OVER (PARTITION BY hcpcs ORDER BY hcpcs) = 1
),
final_2026 AS (
SELECT hcpcs, work_rvu + non_fac_pe_rvu + mp_rvu AS total_nf_rvu
FROM pfs.rvu
WHERE year = 2026 AND (mod IS NULL OR mod = '') AND status_code = 'A'
QUALIFY row_number() OVER (PARTITION BY hcpcs ORDER BY hcpcs) = 1
)
SELECT
p.hcpcs,
p.description,
p.category,
p.total_nf_rvu AS total_nf_rvu_proposed,
f25.total_nf_rvu AS total_nf_rvu_2025,
f26.total_nf_rvu AS total_nf_rvu_2026final
FROM proposed p
JOIN final_2025 f25 USING (hcpcs)
JOIN final_2026 f26 USING (hcpcs)
""")
rvu_delta_raw
return (rvu_delta_raw,)
@app.cell(hide_code=True)
def _(RULES, pl, rvu_delta_raw):
_cf_2025 = RULES[2025].conversion_factor
_cf_2026_proposed = RULES[2026].proposed.conversion_factor
_cf_2026_final = RULES[2026].conversion_factor
rvu_delta = (
rvu_delta_raw.with_columns(
(pl.col("total_nf_rvu_proposed") * _cf_2026_proposed).round(2).alias("dollar_proposed"),
(pl.col("total_nf_rvu_2025") * _cf_2025).round(2).alias("dollar_2025"),
(pl.col("total_nf_rvu_2026final") * _cf_2026_final).round(2).alias("dollar_2026final"),
)
.with_columns(
(pl.col("dollar_proposed") - pl.col("dollar_2025")).round(2).alias("delta_vs_2025"),
(pl.col("dollar_proposed") - pl.col("dollar_2026final")).round(2).alias("delta_vs_final"),
)
)
return (rvu_delta,)
@app.cell(hide_code=True)
def _(mo):
baseline_picker = mo.ui.radio(
options={
"NPRM impact — proposed vs. CY2025 final (what the rule proposed to change)": "delta_vs_2025",
"Proposed→finalized drift — proposed vs. CY2026 final (what the comment period changed)": "delta_vs_final",
},
value="NPRM impact — proposed vs. CY2025 final (what the rule proposed to change)",
label="Compare",
)
baseline_picker
return (baseline_picker,)
@app.cell(hide_code=True)
def _(AMBER, RULES, TEAL, alt, baseline_picker, mo, rvu_delta):
_col = baseline_picker.value
_n = 20
_winners = rvu_delta.sort(_col, descending=True).head(_n)
_losers = rvu_delta.sort(_col, descending=False).head(_n)
_top40 = _winners.vstack(_losers)
_plot_df = _top40.to_pandas()
_plot_df["label"] = _plot_df["hcpcs"] + " — " + _plot_df["description"].str.slice(0, 40)
_plot_df["sign"] = _plot_df[_col].apply(lambda v: "Gain" if v >= 0 else "Loss")
winners_losers_chart = (
alt.Chart(_plot_df)
.mark_bar()
.encode(
x=alt.X(f"{_col}:Q", title="$ change (national unadjusted, GPCI=1.0)"),
y=alt.Y("label:N", title=None, sort=alt.SortField(field=_col, order="descending")),
color=alt.Color(
"sign:N",
title=None,
scale=alt.Scale(domain=["Gain", "Loss"], range=[TEAL, AMBER]),
legend=alt.Legend(orient="top"),
),
tooltip=["hcpcs", "description", alt.Tooltip(f"{_col}:Q", format="$.2f")],
)
.properties(
title=f"Top 20 Winners / Top 20 Losers — {baseline_picker.value}",
width=700,
height=600,
)
)
mo.vstack(
[
winners_losers_chart,
mo.md(f"""
**Sources:** `pfs.rvu_proposed` — CMS-1832-P NPRM,
{RULES[2026].proposed.federal_register_citation}. Baseline —
`pfs.rvu` CY2025 Final ({RULES[2025].federal_register_citation})
or CY2026 Final ({RULES[2026].federal_register_citation}), per
the comparison selected above.
"""),
]
)
return
@app.cell(hide_code=True)
def _(mo, rvu_delta):
mo.vstack(
[
mo.md(f"""
**Full detail — {rvu_delta.height:,} codes** matched across
proposed, CY2025-final, and CY2026-final RVU tables (search
the table below by HCPCS or description).
"""),
mo.ui.table(
rvu_delta.sort("delta_vs_2025").to_pandas(),
page_size=25,
label="RVU / Payment Deltas by HCPCS",
),
]
)
return
@app.cell(hide_code=True)
def _(con, mo):
_new = con.execute("""
SELECT count(*) FROM pfs.rvu_proposed p
WHERE (p.modifier IS NULL OR p.modifier='') AND p.status_code='A' AND p.nonfac_pe_rvu IS NOT NULL
AND NOT EXISTS (SELECT 1 FROM pfs.rvu f WHERE f.year=2025 AND f.hcpcs=p.hcpcs AND (f.mod IS NULL OR f.mod=''))
""").fetchone()[0]
_dropped = con.execute("""
SELECT count(*) FROM pfs.rvu f
WHERE f.year=2025 AND (f.mod IS NULL OR f.mod='') AND f.status_code='A'
AND NOT EXISTS (SELECT 1 FROM pfs.rvu_proposed p WHERE p.hcpcs=f.hcpcs AND (p.modifier IS NULL OR p.modifier=''))
""").fetchone()[0]
mo.md(f"""
> **Coverage caveat:** {_new} HCPCS codes appear in `pfs.rvu_proposed`
> with no CY2025-final counterpart (new/renumbered codes), and {_dropped}
> CY2025-final codes have no match in `pfs.rvu_proposed` (dropped,
> bundled, or excluded from the Addendum B extract used to build the
> lake table). Both groups are excluded from the delta analysis above
> rather than shown with a fabricated baseline.
**Source:** `pfs.rvu_proposed` — CMS-1832-P Addendum B, 90 FR 32352.
`pfs.rvu` — annual PFS Final Rule Addendum B.
""")
return
# ── 3. Specialty impact ────────────────────────────────────────────────
@app.cell(hide_code=True)
def _(mo):
mo.md("""
## 3. Specialty Impact
CMS's own specialty-impact table — **Table 92, "CY 2026 PFS Estimated
Impact on Total Allowed Charges by Specialty"** (NPRM, 90 FR
32802–32806) — is what the brief calls for here. It is **not
available as transcribable text**: the Federal Register's own
full-text extraction of the NPRM embeds Table 92 as five scanned TIFF
graphics (`EP16JY25.178`–`.182`), not selectable text, in both the
plain-text and PDF-text-layer versions of `data/fr_downloads/
2025-13271.{txt,pdf}` that are ingested into this repository. There is
also no specialty-to-HCPCS mapping in the lake (`information_schema`
shows only `cms`, `opps`, and `pfs` schemas — no `reference_data`
schema exists to join against). CMS's real specialty attribution uses
claims-weighted utilization by specialty, which this repo does not
ingest.
**What follows instead** is a coarse CPT-range proxy — the same
category buckets used in `skin_sub_budget_neutrality.py` — applied to
the RVU deltas computed in Section 2. It approximates *which kinds of
services* moved, not *which specialties* were affected, and is
explicitly **not** a substitute for Table 92.
""")
return
@app.cell(hide_code=True)
def _(pl, rvu_delta):
category_impact = (
rvu_delta.group_by("category")
.agg(
pl.col("hcpcs").count().alias("codes"),
pl.col("delta_vs_2025").sum().round(0).alias("total_delta_vs_2025"),
pl.col("delta_vs_final").sum().round(0).alias("total_delta_vs_final"),
)
.sort("total_delta_vs_2025", descending=True)
)
category_impact
return (category_impact,)
@app.cell(hide_code=True)
def _(AMBER, TEAL, alt, category_impact, mo):
_df = category_impact.to_pandas()
_df["sign"] = _df["total_delta_vs_2025"].apply(lambda v: "Net gain" if v >= 0 else "Net loss")
category_chart = (
alt.Chart(_df)
.mark_bar()
.encode(
x=alt.X("total_delta_vs_2025:Q", title="Aggregate $ change vs. CY2025 (proxy category)"),
y=alt.Y("category:N", title=None, sort="-x"),
color=alt.Color(
"sign:N",
title=None,
scale=alt.Scale(domain=["Net gain", "Net loss"], range=[TEAL, AMBER]),
legend=alt.Legend(orient="top"),
),
tooltip=["category", "codes", alt.Tooltip("total_delta_vs_2025:Q", format="$,.0f")],
)
.properties(title="CPT-Range Proxy — Not CMS's Official Specialty Table", width=700, height=350)
)
mo.vstack(
[
category_chart,
mo.md("""
*Proxy category buckets, not specialty attribution. CMS's
official specialty impacts: Table 92, NPRM 90 FR 32802–32806
(embedded graphic, not machine-readable in this repo's FR
corpus). Public-use file with granular specialty impacts:
cms.gov, CY2026 PFS proposed rule downloads.*
"""),
]
)
return
# ── 4. Advanced APM requirements ───────────────────────────────────────
@app.cell(hide_code=True)
def _(mo):
mo.md("""
## 4. Advanced APM (QP) Requirements
Under MACRA 2015, clinicians who participate heavily enough in an
Advanced Alternative Payment Model (Advanced APM) during a "QP
Performance Period" become Qualifying APM Participants (QPs) for the
payment year two years later (`payment_year = performance_year + 2`).
QP status has, historically, meant MIPS exclusion and a lump-sum
incentive payment; starting payment year 2026 it also means a
**different conversion factor**.
""")
return
@app.cell(hide_code=True)
def _(for_payment_year, mo):
_governs_2026 = for_payment_year(2026)
mo.md(f"""
`qpp.for_payment_year(2026)` resolves to QP Performance Period
**{_governs_2026.performance_year}** ({_governs_2026.citation}) — the
performance period whose determinations govern CY2026 payment, and
the first performance period where `qp_cf_applies` is
**{_governs_2026.qp_cf_applies}**.
""")
return
@app.cell(hide_code=True)
def _(QPP, pl):
_rows = []
for _perf_year, _qy in sorted(QPP.items()):
_prop = _qy.proposed
_rows.append(
{
"performance_year": _perf_year,
"payment_year": _qy.payment_year,
"qp_payment_pct": _qy.qp_thresholds.payment_amount_pct,
"qp_patient_pct": _qy.qp_thresholds.patient_count_pct,
"partial_qp_payment_pct": _qy.partial_qp_thresholds.payment_amount_pct,
"partial_qp_patient_pct": _qy.partial_qp_thresholds.patient_count_pct,
"revenue_nominal_pct": _qy.risk_standards.revenue_nominal_pct,
"benchmark_nominal_pct": _qy.risk_standards.benchmark_nominal_pct,
"apm_incentive_pct": _qy.apm_incentive_pct,
"qp_cf_applies": _qy.qp_cf_applies,
"cehrt_required": _qy.cehrt_required,
"proposed_numeric_change": (
"none — see disposition table below" if _prop is not None else "n/a"
),
"citation": _qy.citation,
}
)
apm_thresholds = pl.DataFrame(_rows)
apm_thresholds
return (apm_thresholds,)
@app.cell(hide_code=True)
def _(alt, apm_thresholds, mo):
_df = apm_thresholds.to_pandas()
_df["apm_incentive_pct"] = _df["apm_incentive_pct"].fillna(0.0)
_df["status"] = _df["apm_incentive_pct"].apply(lambda v: "Paid" if v > 0 else "Sunset")
incentive_chart = (
alt.Chart(_df)
.mark_bar()
.encode(
x=alt.X("payment_year:O", title="Payment year"),
y=alt.Y("apm_incentive_pct:Q", title="APM incentive payment (% of base-year Part B paid claims)"),
color=alt.Color("status:N", title=None, scale=alt.Scale(domain=["Paid", "Sunset"])),
tooltip=["performance_year", "payment_year", "apm_incentive_pct", "status"],
)
.properties(title="APM Incentive Payment Sunset", width=600, height=300)
)
_citations = ", ".join(sorted(set(_df["citation"])))
mo.vstack(
[
incentive_chart,
mo.md(f"""
Payment year 2026 (QP Performance Period 2024) is, under
current law, the **last** year with a lump-sum APM incentive
payment (1.88% of base-year paid claims). From payment year
2027 onward, QP status stops paying a bonus and starts
(instead) determining *which conversion factor applies* — see
below.
**Sources:** `qpp.QPP` performance years 2023–2026
({_citations}).
"""),
]
)
return
@app.cell(hide_code=True)
def _(QPP, mo):
_cy = QPP[2026]
_proposed = _cy.proposed
_qp = _cy.qp_thresholds
_partial = _cy.partial_qp_thresholds
mo.md(f"""
### CY2026 NPRM proposed QPP changes — proposed vs. finalized disposition
Every FR page-pincite in the "Disposition" column below is quoted
**verbatim from `qpp.QPP[2026].proposed.changes`**
({_proposed.federal_register_citation}, {_proposed.cms_rule_id}) — that
field is the single source of truth for this table; nothing here is a
second, independently-typed citation.
| Proposal | Disposition |
|---|---|
| Individual-level QP determination (new Threshold Score calc, Sec. 414.1425(b)(3)) | **Finalized as proposed** (90 FR 49923–49928, 49980) |
| Attribution-eligible beneficiary definition — expand 6th criterion beyond E/M services | **Finalized WITH MODIFICATION** — dual E/M + covered-professional-services methodology (90 FR 49980) |
| Sunset the Medical Home Model 50-clinician limit (Sec. 414.1415(c)(7)) after the 2025 QP Performance Period | **Finalized as proposed** (90 FR 49929) |
| QP / Partial QP percentage thresholds | **No numeric change proposed** — remain `qp_thresholds` {_qp.payment_amount_pct:.0f}%/{_qp.patient_count_pct:.0f}% (QP), `partial_qp_thresholds` {_partial.payment_amount_pct:.0f}%/{_partial.patient_count_pct:.0f}% (Partial QP) |
| Nominal-amount risk standards (42 CFR 414.1415(c)(3)(i)) / CEHRT requirement | **No change proposed** — cross-referenced by section only |
Full sourced narrative: `qpp.QPP[2026].proposed.changes`.
""")
return
@app.cell(hide_code=True)
def _(mo):
mo.md("""
### What QP status is worth in dollars — 3 example HCPCS
National, unadjusted (GPCI = 1.0) payment for a single unit of
service, computed as `(work_rvu + non_fac_pe_rvu + mp_rvu) × CF`,
comparing the QP and non-QP conversion factors for both the NPRM and
the Final Rule:
- **99213** — established-patient office visit, low complexity (E/M)
- **27447** — total knee arthroplasty (major procedure)
- **70553** — MRI brain, without and with contrast (imaging)
""")
return
@app.cell(hide_code=True)
def _(RULES, pl, q):
_example_rvu = q("""
SELECT hcpcs, description, work_rvu, non_fac_pe_rvu, mp_rvu,
work_rvu + non_fac_pe_rvu + mp_rvu AS total_rvu
FROM pfs.rvu
WHERE year = 2026 AND (mod IS NULL OR mod = '')
AND hcpcs IN ('99213', '27447', '70553')
""")
_cy26 = RULES[2026]
_prop = _cy26.proposed
_rows = []
for _r in _example_rvu.iter_rows(named=True):
for _vintage, _cf_nonqp, _cf_qp in (
("CY2026 Proposed", _prop.conversion_factor, _prop.cf_qp),
("CY2026 Final", _cy26.conversion_factor, _cy26.cf_qp),
):
_pay_nonqp = round(_r["total_rvu"] * _cf_nonqp, 2)
_pay_qp = round(_r["total_rvu"] * _cf_qp, 2)
_rows.append(
{
"hcpcs": _r["hcpcs"],
"description": _r["description"],
"vintage": _vintage,
"non_qp_payment": _pay_nonqp,
"qp_payment": _pay_qp,
"qp_differential": round(_pay_qp - _pay_nonqp, 2),
}
)
qp_differential = pl.DataFrame(_rows)
qp_differential
return (qp_differential,)
@app.cell(hide_code=True)
def _(alt, mo, qp_differential):
differential_chart = (
alt.Chart(qp_differential.to_pandas())
.mark_bar()
.encode(
x=alt.X("hcpcs:N", title="HCPCS"),
xOffset=alt.XOffset("vintage:N", sort=["CY2026 Proposed", "CY2026 Final"]),
y=alt.Y("qp_differential:Q", title="QP minus non-QP payment ($, national unadjusted)"),
color=alt.Color("vintage:N", title=None, sort=["CY2026 Proposed", "CY2026 Final"]),
tooltip=["hcpcs", "description", "vintage", alt.Tooltip("qp_differential:Q", format="$.2f")],
)
.properties(title="Dollar Value of QP Status — 3 Example Codes", width=500, height=320)
)
mo.vstack(
[
differential_chart,
mo.md("""
**Sources:** RVUs — `pfs.rvu`, CY2026 (90 FR 49266). CFs —
`pfs.rules.RULES[2026]` (final, 90 FR 49266) and
`RULES[2026].proposed` (NPRM, 90 FR 32352). National unadjusted
means GPCI = 1.0 — actual payment varies by locality.
"""),
]
)
return
# ── 5. Provenance ───────────────────────────────────────────────────────
@app.cell(hide_code=True)
def _(mo):
mo.md("""
## 5. Provenance
Ingest-log entries (`cms.ingest_log`) for every table this notebook
reads from — `pfs.rvu` and `pfs.rvu_proposed` — so every figure above
can be traced back to a specific ingest run, source file, and Federal
Register citation. (`pfs.gpci` is not queried anywhere in this
notebook — see the intro's GPCI = 1.0 scope note — so it is
deliberately excluded here rather than claimed as a source.)
""")
return
@app.cell(hide_code=True)
def _(mo, q):
provenance = q("""
SELECT run_id, ingested_at, module, table_name, rule_id,
source_file, sha256, rows, fr_citation, pincite_key
FROM cms.ingest_log
WHERE table_name IN ('pfs.rvu', 'pfs.rvu_proposed')
ORDER BY ingested_at DESC
""")
mo.ui.table(provenance.to_pandas(), label="Ingest Log — Tables Used in This Notebook")
return
if __name__ == "__main__":
app.run()

View File

@@ -33,7 +33,7 @@ api = [
"uvicorn>=0.41.0",
"httpx>=0.28.1",
"pyjwt>=2.13.0",
"cryptography>=48.0.1",
"cryptography>=50.0.0",
]
bcda = [
"stack[conf]",
@@ -94,6 +94,10 @@ pfs = [
"duckdb>=1.0.0",
"narwhals>=2.17.0",
]
qpp = [
"stack[conf]",
"pydantic>=2.0.0",
]
rec = [
"stack[conf]",
"stack[pfs]",
@@ -159,6 +163,7 @@ all = [
"stack[llm]",
"stack[perf]",
"stack[pfs]",
"stack[qpp]",
"stack[rec]",
"stack[rex]",
"stack[lake]",
@@ -212,6 +217,6 @@ source = ["src"]
concurrency = ["multiprocessing", "thread"]
[tool.uv.build-backend]
module-name = ["aco", "api", "bcda", "bib", "bls", "ccw", "cli", "cms", "conf", "llm", "mail", "opps", "perf", "pfs", "prisma", "rec", "rex", "sem"]
module-name = ["aco", "api", "bcda", "bib", "bls", "ccw", "cli", "cms", "conf", "llm", "mail", "opps", "perf", "pfs", "prisma", "qpp", "rec", "rex", "sem"]
namespace = true
source-exclude = ["compose.yml","infra/**","data/**","notebooks/**","tuva/**","assets/**","docs/**","dev/**","bundle/**","cloud/**"]

View File

@@ -8,20 +8,21 @@ app = typer.Typer(no_args_is_help=True)
@app.command()
def index(
collection: str = typer.Option(
"comments", help="Which collection: comments | corpus."
"comments", help="Which collection: comments | corpus | rules."
),
docket: str = typer.Option("", help="Limit comments to one docket id."),
key: list[str] = typer.Option([], "--key", help="Limit rules to these item keys."),
force: bool = typer.Option(False, help="Re-embed even when unchanged."),
limit: int = typer.Option(0, help="Stop after N docs (0 = all)."),
) -> None:
"""Embed comments/corpus into pgvector (incremental, resumable)."""
"""Embed comments/corpus/rules into pgvector (incremental, resumable)."""
import itertools
from conf.connect import bib
from llm import config as llm_config
from llm.index import index_docs
from llm.pool import HostPool
from llm.source import iter_comment_docs, iter_corpus_docs
from llm.source import iter_comment_docs, iter_corpus_docs, iter_rule_docs
cfg = llm_config.load()
store = bib()
@@ -29,8 +30,10 @@ def index(
docs = iter_comment_docs(store, docket=docket)
elif collection == "corpus":
docs = iter_corpus_docs(store)
elif collection == "rules":
docs = iter_rule_docs(store, keys=tuple(key))
else:
raise typer.BadParameter("collection must be 'comments' or 'corpus'")
raise typer.BadParameter("collection must be 'comments', 'corpus' or 'rules'")
if limit:
docs = itertools.islice(docs, limit)
stats = index_docs(

128
src/cms/ingest_log.py Normal file
View File

@@ -0,0 +1,128 @@
"""Append-only DuckDB provenance table for ingest operations.
Complements the JSONL logs in `cms.log`, does not replace them.
Tracks which reference tables were ingested, when, and by which module.
"""
from __future__ import annotations
import hashlib
from datetime import datetime, timezone
from pathlib import Path
from uuid import uuid4
def new_run_id() -> str:
"""Generate a new run ID as a UUID4 hex string."""
return uuid4().hex
def file_sha256(path: str | Path) -> str:
"""Compute SHA256 hash of a file.
Args:
path: Path to the file to hash.
Returns:
Hexadecimal SHA256 hash of the file contents.
Raises:
FileNotFoundError: If the file does not exist.
"""
path = Path(path)
sha256_hash = hashlib.sha256()
with open(path, "rb") as f:
for chunk in iter(lambda: f.read(4096), b""):
sha256_hash.update(chunk)
return sha256_hash.hexdigest()
def ensure_table(con) -> None:
"""Create the cms.ingest_log table if it does not exist.
Args:
con: An open DuckDB connection.
"""
con.execute("""
CREATE SCHEMA IF NOT EXISTS cms
""")
con.execute("""
CREATE TABLE IF NOT EXISTS cms.ingest_log (
run_id VARCHAR,
ingested_at TIMESTAMP,
module VARCHAR,
table_name VARCHAR,
rule_id VARCHAR,
source_file VARCHAR,
sha256 VARCHAR,
rows BIGINT,
fr_citation VARCHAR,
pincite_key VARCHAR
)
""")
def log_ingest(
con,
*,
module: str,
table_name: str,
rows: int,
source_file: str = "",
rule_id: str = "",
fr_citation: str = "",
pincite_key: str = "",
run_id: str = "",
) -> None:
"""Append an ingest log entry to the provenance table.
Args:
con: An open DuckDB connection.
module: Name of the module performing the ingest.
table_name: Name of the table being ingested.
rows: Number of rows ingested.
source_file: Path to the source file (optional). If provided and exists,
its SHA256 hash is computed and stored.
rule_id: Rule ID associated with this ingest (optional).
fr_citation: Federal Register citation (optional).
pincite_key: Pincite key (optional).
run_id: Run ID for this ingest operation (optional). If not provided,
a new one is generated.
"""
ensure_table(con)
# Generate run_id if not provided
if not run_id:
run_id = new_run_id()
# Compute SHA256 if source_file exists
sha256 = ""
if source_file:
source_path = Path(source_file)
if source_path.exists():
sha256 = file_sha256(source_path)
# Get current timestamp in UTC
ingested_at = datetime.now(timezone.utc)
# Insert the row
con.execute(
"""
INSERT INTO cms.ingest_log (
run_id, ingested_at, module, table_name, rule_id,
source_file, sha256, rows, fr_citation, pincite_key
) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
""",
[
run_id,
ingested_at,
module,
table_name,
rule_id,
source_file,
sha256,
rows,
fr_citation,
pincite_key,
],
)

View File

@@ -15,6 +15,8 @@ so parsing the comment id is the reliable path to a comment's docket.
from __future__ import annotations
import html
import re
from pathlib import Path
from typing import Iterator
@@ -123,6 +125,89 @@ def _attachment_text(store: Store, item_key: str) -> str:
return "\n\n".join(parts)
_TAG_RE = re.compile(r"</?[A-Za-z][^>]*>")
def _strip_html_wrapper(text: str) -> str:
"""Drop the FR ``.txt`` attachment's HTML wrapper and inline markup.
FR TXT attachments are HTML-wrapped: ``<html><head>...<body><pre>``
then the plain text, closed with ``</pre></body></html>``. Strip
everything through the first ``<pre>`` and any trailing close tags;
text without that wrapper passes through unchanged.
The FR text itself also carries inline HTML — e.g. Cloudflare's
obfuscated ``<a href="/cdn-cgi/l/email-protection#...">`` mailto
anchors and page-break anchors. Those are stripped with a
``</?[A-Za-z][^>]*>`` regex (this is a controlled, known corpus —
not attacker-supplied HTML — so no HTML-parsing dependency is
needed), keeping the anchor's inner text. The tag must start with a
letter (optionally preceded by ``/``) so free-text comparison
fragments like ``p<0.05`` or ``x>2`` are never mistaken for markup.
HTML entities (``&amp;`` etc.) are then unescaped. Plain-text
markers like ``[[Page NNNNN]]`` contain no angle brackets and pass
through untouched.
"""
idx = text.find("<pre>")
if idx == -1:
body = text
else:
body = text[idx + len("<pre>") :]
stripped = body.rstrip()
for suffix in ("</pre></body></html>", "</pre>"):
if stripped.endswith(suffix):
body = stripped[: -len(suffix)]
break
body = _TAG_RE.sub("", body)
return html.unescape(body)
def _rule_text(store: Store, item_key: str) -> str:
"""TXT attachment (HTML wrapper stripped) preferred; else PDF-extract."""
rows = (
store._con()
.execute(
"SELECT a.storage_path FROM attachments a "
"JOIN items i ON i.id = a.item_id WHERE i.key = ?",
(item_key,),
)
.fetchall()
)
for (storage_path,) in rows:
path = Path(storage_path)
if path.suffix.lower() == ".txt" and path.exists():
return _strip_html_wrapper(
path.read_text(encoding="utf-8", errors="replace")
)
return _attachment_text(store, item_key)
def iter_rule_docs(
store: Store, *, keys: tuple[str, ...] = (), tag: str = ""
) -> Iterator[Doc]:
"""One Doc per FR rule item: TXT attachment preferred, PDF-extract fallback."""
for item in store.list_items(item_type="rule", tag=tag):
if keys and item.key not in keys:
continue
text = _rule_text(store, item.key)
if not text.strip():
continue
cms_rule = next(
(t.split(":", 1)[1] for t in item.tags if t.startswith("cms-rule:")), ""
)
yield Doc(
key=item.key,
text=text,
metadata={
"doctype": "rule",
"cms_rule_id": cms_rule,
"fr_document_number": item.document_number or "",
"year": _year_of(store, item.key),
"item_key": item.key,
},
)
def iter_corpus_docs(store: Store, *, tag: str = "") -> Iterator[Doc]:
"""Every non-comment item; attachment text + abstract."""
for item in store.list_items(tag=tag):

172
src/pfs/nprm.py Normal file
View File

@@ -0,0 +1,172 @@
"""NPRM Addendum B loader → ``pfs.rvu_proposed`` (#592).
Loads the CY2026 NPRM Addendum B "Relative Value Units and Related
Information" workbook — registered in bib under the
``sup:2026_PFS_NPRM`` tag — into ``pfs.rvu_proposed``, the
proposed-rule counterpart to the final-rule ``pfs.rvu`` table that
``pfs.pipe.load_all`` populates. Reuses ``pfs.pipe``'s header-detect
readers and column map instead of reimplementing them; the target
schema is intentionally narrower than ``pfs.rvu`` (no PPRRVU-only
columns) since Addendum B never carries them.
"""
from __future__ import annotations
import re
from pathlib import Path
from typing import Any
_ADDENDUM_B_TAG = "sup:2026_PFS_NPRM"
_ADDENDUM_B_RE = re.compile(r"(?i)addendum[_ ]?b")
# pfs.pipe._RVU_COLUMNS normalizes raw headers to these intermediate
# names; map them onto the pfs.rvu_proposed target schema.
_TARGET_RENAME = {
"hcpcs": "hcpcs",
"mod": "modifier",
"description": "description",
"status_code": "status_code",
"work_rvu": "work_rvu",
"non_fac_pe_rvu": "nonfac_pe_rvu",
"fac_pe_rvu": "fac_pe_rvu",
"mp_rvu": "mp_rvu",
}
_TARGET_COLUMNS = [
"hcpcs",
"modifier",
"description",
"status_code",
"work_rvu",
"nonfac_pe_rvu",
"fac_pe_rvu",
"mp_rvu",
"cms_rule_id",
]
# Intermediate (pre-rename) names as produced by pfs.pipe._normalize_columns.
_RAW_NUMERIC_COLUMNS = ("work_rvu", "non_fac_pe_rvu", "fac_pe_rvu", "mp_rvu")
def _discover_addendum_b() -> Path:
"""Locate the NPRM Addendum B attachment in the bib store.
Queries attachments of items tagged ``sup:2026_PFS_NPRM`` for one
whose filename matches ``addendum[_ ]?b`` (case-insensitive),
mirroring the join in ``llm/source.py::_attachment_text``.
"""
from conf import connect
store = connect.bib()
rows = (
store._con()
.execute(
"SELECT a.filename, a.storage_path FROM attachments a "
"JOIN items i ON i.id = a.item_id "
"JOIN item_tags it ON it.item_id = i.id "
"JOIN tags t ON t.id = it.tag_id "
"WHERE t.name = ? "
"ORDER BY a.id",
(_ADDENDUM_B_TAG,),
)
.fetchall()
)
for row in rows:
filename = row["filename"] or ""
if _ADDENDUM_B_RE.search(filename):
return Path(row["storage_path"])
raise FileNotFoundError(
f"No Addendum B attachment found among bib items tagged {_ADDENDUM_B_TAG!r}"
)
def load_rvu_proposed(con: Any, *, cms_rule_id: str = "CMS-1832-P") -> dict:
"""Load the NPRM Addendum B workbook into ``pfs.rvu_proposed``.
Idempotent: deletes any existing rows for ``cms_rule_id`` before
inserting, so re-running the ingest is safe.
Returns ``{"rows": int, "source_file": str}``.
"""
import polars as pl
from pfs.pipe import (
_RVU_COLUMNS,
_normalize_columns,
_read_csv_with_header,
_read_excel,
)
path = _discover_addendum_b()
ext = path.suffix.lower()
if ext == ".csv":
df = _read_csv_with_header(str(path))
else:
df = _read_excel(str(path))
if "hcpcs" not in df.columns:
df = _normalize_columns(df, _RVU_COLUMNS)
if "hcpcs" not in df.columns:
raise ValueError(f"{path}: no hcpcs column found after normalization")
for col in (*_RAW_NUMERIC_COLUMNS, "mod", "description", "status_code"):
if col not in df.columns:
df = df.with_columns(pl.lit(None).alias(col))
df = df.with_columns(
# Addendum B numeric cells carry leading/trailing padding
# (" 0.00") that Polars' string->float cast won't tolerate —
# strip before casting or every padded value silently becomes
# null. Bare cast(strict=False) still nulls genuine non-numeric
# markers like "NA".
[
pl.col(c).cast(pl.Utf8).str.strip_chars().cast(pl.Float64, strict=False)
for c in _RAW_NUMERIC_COLUMNS
]
)
df = df.with_columns(
pl.col(c).cast(pl.Utf8, strict=False).str.strip_chars()
for c in ("hcpcs", "mod", "description", "status_code")
)
# Addendum B workbooks append copyright/footnote text in column A
# below the data (e.g. "1 CPT codes and descriptors only are
# copyright ..."). Real HCPCS/CPT codes are always exactly 5
# alphanumeric characters, so that length check both drops blank
# rows and these footnotes without needing to special-case them.
df = df.filter(
pl.col("hcpcs").is_not_null()
& pl.col("hcpcs").str.contains(r"^[A-Za-z0-9]{5}$")
)
df = df.select(list(_TARGET_RENAME)).rename(_TARGET_RENAME)
df = df.with_columns(pl.lit(cms_rule_id).alias("cms_rule_id"))
df = df.select(_TARGET_COLUMNS)
con.execute("CREATE SCHEMA IF NOT EXISTS pfs")
con.execute(
"""
CREATE TABLE IF NOT EXISTS pfs.rvu_proposed (
hcpcs VARCHAR,
modifier VARCHAR,
description VARCHAR,
status_code VARCHAR,
work_rvu DOUBLE,
nonfac_pe_rvu DOUBLE,
fac_pe_rvu DOUBLE,
mp_rvu DOUBLE,
cms_rule_id VARCHAR
)
"""
)
con.execute("DELETE FROM pfs.rvu_proposed WHERE cms_rule_id = ?", [cms_rule_id])
con.register("_nprm_df", df)
try:
con.execute(
"INSERT INTO pfs.rvu_proposed SELECT "
"hcpcs, modifier, description, status_code, work_rvu, "
"nonfac_pe_rvu, fac_pe_rvu, mp_rvu, cms_rule_id FROM _nprm_df"
)
finally:
con.unregister("_nprm_df")
return {"rows": df.height, "source_file": str(path)}

View File

@@ -66,6 +66,71 @@ class CfSegment(BaseModel):
(``"CAA 2024 §3201"``, etc.) or derivation note."""
class ProposedRule(BaseModel):
"""Parameters as *proposed* in the year's NPRM (pre-final).
CMS publishes a Notice of Proposed Rulemaking (NPRM) months before
the Final Rule; the two can and do differ (comment period,
statutory adjustments, and CMS's own re-estimates all move the
numbers between proposed and final). This model captures the
NPRM's own stated values so they can be compared against the
eventual ``RuleYear`` final values — it is never itself used for
payment math.
CY2026 values are sourced from the CY 2026 PFS NPRM (CMS-1832-P,
90 FR 32352, July 16, 2025), ingested into Zotero as
:pincite:`2KVJ2HKX`."""
cms_rule_id: str
"""CMS internal rule identifier, e.g. ``"CMS-1832-P"`` (the ``-P``
suffix denotes "proposed"; the Final Rule reuses the number with
``-F``)."""
fr_document_number: str
"""Federal Register document number, e.g. ``"2025-13271"`` — the
identifier stamped on the captured full-text file."""
federal_register_citation: str
"""Federal Register citation of the NPRM, e.g. ``"90 FR 32352"``
— from the txt header."""
published: date
"""NPRM publication date in the Federal Register."""
comment_close: date
"""End of the public comment period (from the NPRM's DATES
section)."""
conversion_factor: float
"""Proposed CY2026 nonqualifying-APM (non-QP) standard conversion
factor. See :pincite:`2KVJ2HKX`."""
cf_qp: float | None = None
"""Proposed CY2026 qualifying-APM (QP) standard conversion
factor. See :pincite:`2KVJ2HKX`."""
anesthesia_cf: float | None = None
"""Proposed CY2026 nonqualifying-APM (non-QP) anesthesia
conversion factor. See :pincite:`2KVJ2HKX`."""
anesthesia_cf_qp: float | None = None
"""Proposed CY2026 qualifying-APM (QP) anesthesia conversion
factor. See :pincite:`2KVJ2HKX`."""
budget_neutrality_adjustor: float = 1.0
"""Budget-neutrality adjustment the NPRM applied when deriving
the proposed CFs from the CY2025 conversion factor. See
:pincite:`2KVJ2HKX`."""
telehealth_originating_site_fee: float | None = None
"""Proposed telehealth originating site facility fee ($) for
HCPCS code Q3014. See :pincite:`2KVJ2HKX`."""
notes: str = ""
"""Free-text transcription notes — caveats, values not stated in
the NPRM, or discrepancies with the eventual Final Rule."""
class RuleYear(BaseModel):
"""Annual PFS rule parameters for a single calendar year."""
@@ -161,6 +226,14 @@ class RuleYear(BaseModel):
federal_register_citation: str = ""
"""Federal Register citation (e.g. '89 FR 67668')."""
proposed: ProposedRule | None = None
"""NPRM (proposed-rule) parameters for this year, when captured.
The fields above this one are the **Final Rule** values and remain
authoritative for all payment math — ``proposed`` is informational
only, for comparing what CMS proposed against what it finalized.
Never read ``proposed.*`` in place of a final field."""
# ── Derived lookups ───────────────────────────────────────────
def cf_for_date(self, d: date) -> float:
@@ -345,7 +418,36 @@ RULES: dict[int, RuleYear] = {
budget_neutrality_adjustor=1.0049, # +0.49% BN adjustment
clinical_labor_rate_update=True,
telehealth_originating_site_fee=30.38,
federal_register_citation="90 FR 101174",
# Corrected from "90 FR 101174" (mistranscribed; no such page in
# this rule). The Final Rule (RIN 0938-AV50, Vol. 90 No. 212,
# Nov 5, 2025) runs 90 FR 49266-50481; per this registry's
# convention (see other years above) the citation is the rule's
# first page. The CF statement itself ($33.5675 QP / $33.4009
# non-QP) is at the pincite 90 FR 49961.
federal_register_citation="90 FR 49266",
# NPRM values (pre-final) per :pincite:`2KVJ2HKX` — CMS-1832-P,
# 90 FR 32352, transcribed from data/fr_downloads/2025-13271.txt.
proposed=ProposedRule(
cms_rule_id="CMS-1832-P",
fr_document_number="2025-13271",
federal_register_citation="90 FR 32352",
published=date(2025, 7, 16),
comment_close=date(2025, 9, 12),
conversion_factor=33.4209, # nonqualifying APM standard CF
cf_qp=33.5875, # qualifying APM standard CF
anesthesia_cf=20.5728, # nonqualifying APM anesthesia CF
anesthesia_cf_qp=20.6754, # qualifying APM anesthesia CF
budget_neutrality_adjustor=1.0055, # "0.55 percent positive"
telehealth_originating_site_fee=31.85, # HCPCS Q3014
notes=(
"Transcribed from data/fr_downloads/2025-13271.txt "
"(NPRM full text) per :pincite:`2KVJ2HKX`. CFs and "
"anesthesia CFs at file line ~39205-39220 (90 FR "
"32800); telehealth fee at line ~4710 (90 FR 32396); "
"comment-close DATES at line ~106 (90 FR 32352). "
"Final Rule values differ (see fields above)."
),
),
),
}

446
src/qpp/__init__.py Normal file
View File

@@ -0,0 +1,446 @@
"""Quality Payment Program (QPP) — QP / Advanced-APM registry.
Under MACRA 2015 (section 1848(q) and section 1833(z) of the Act),
eligible clinicians who participate heavily enough in an Advanced
Alternative Payment Model (Advanced APM) become Qualifying APM
Participants (QPs) for a "QP Performance Period" and are, as a
result, excluded from MIPS reporting and payment adjustments for the
corresponding payment year. Clinicians who clear a lower bar become
"Partial QPs" and may elect whether to report to MIPS.
The ``QppYear`` model captures, for a single QP Performance Period,
the thresholds and financial-risk standards that govern QP/Partial
QP status, the payment-year APM Incentive Payment (where still in
effect), and whether the payment year's differential (QP vs. non-QP)
Advanced-APM conversion factor applies.
Performance year vs. payment year
----------------------------------
QP status is determined for a "QP Performance Period" (a calendar
year); the resulting MIPS exclusion / APM Incentive Payment /
differential CF apply two years later, in the "payment year"::
payment_year = performance_year + 2
e.g. QP Performance Period 2024 determines payment-year-2026
treatment. ``for_payment_year(2026)`` looks up the ``QppYear`` whose
``payment_year`` matches.
QP conversion-factor split
---------------------------
Section 1848(d)(20) of the Act establishes two separate PFS
conversion factors beginning payment year 2026: a "qualifying APM"
CF (update +0.75%/yr) for QPs, and a "nonqualifying APM" CF (update
+0.25%/yr) for everyone else. ``QppYear.qp_cf_applies`` is ``True``
starting with performance year 2024 (whose payment year, 2026, is
the first split-CF year) and ``False`` for earlier performance
years. See :class:`pfs.rules.RuleYear` (``cf_qp`` /
``conversion_factor`` on ``RULES[2026]``) for the actual dollar CFs.
APM Incentive Payment sunset
------------------------------
The lump-sum APM Incentive Payment (a fixed percentage of a QP's
prior-year Part B paid claims) is statutorily phased out: 5% for
payment years 2019-2024, 3.5% for payment year 2025 (QP Performance
Period 2023), 1.88% for payment year 2026 (QP Performance Period
2024) — and payment year 2026 is, under current law, the *last* year
these payments are made. ``QppYear.apm_incentive_pct`` is ``None``
for QP Performance Periods 2025 and later.
CMS-1832-P (CY2026 PFS proposed rule, 90 FR 32352, transcribed from
``data/fr_downloads/2025-13271.txt``) proposed several QPP
methodology changes effective beginning the 2026 QP Performance
Period — individual-level QP determinations, an expanded
attribution-eligible-beneficiary definition, and sunsetting the
Medical Home Model 50-eligible-clinician limit — captured on
``QPP[2026].proposed``. It proposed **no change** to the QP /
Partial QP percentage thresholds, the generally applicable nominal
amount standards, or the CEHRT requirement; see ``proposed.changes``
for the sourced disposition, including the Final Rule's correction
of an internal inconsistency in the NPRM's own regulatory-impact-
analysis text. Ingested into Zotero as :pincite:`2KVJ2HKX`.
Nominal amount standard sourcing caveat
-----------------------------------------
Neither the CY2026 NPRM nor the CY2026 Final Rule (``2025-19787.txt``)
restates the *numeric* generally applicable nominal amount standard
(42 CFR 414.1415(c)(3)(i)(A)/(B)) — both only cross-reference the
regulation by section number (e.g. NPRM line 26819-26821, Final Rule
line 50693-50696), which is itself evidence CMS proposed no change to
it. The revenue-based standard, 42 CFR 414.1415(c)(3)(i)(A) (8%), is
transcribed from the CY2019 PFS Final Rule
(``data/fr_downloads/2018-24170.txt:47248-47252``, 83 FR 59923 —
"we are finalizing our proposal to revise Sec. 414.1415(c)(3)(i)(A) to
maintain the generally applicable revenue-based nominal amount
standard at 8 percent ... for QP Performance Periods 2021 through
2024"), already present in this repository's ``fr_downloads`` corpus —
commenters asked CMS to raise it for 2025+ and CMS did not finalize an
increase, so it is carried forward unchanged. This document also
separately restates an **8 percent** standard for the *Other Payer*
Advanced APM criterion (42 CFR 414.1420(d)(3)(i), same file, line
48189-48192) — a different provision that happens to share the same
number; do not conflate the two when re-verifying this citation.
The benchmark-based standard, 42 CFR 414.1415(c)(3)(i)(B), could
**not** be found stated as a bare percentage anywhere in this
repository's FR corpus (``2025-13271.txt``, ``2025-19787.txt``,
``2018-24170.txt``, and ``2019-16041.txt`` were all searched). The
only nearby quoted figure — "at least 3 percent of the expected
expenditures" — belongs to the textually distinct Other Payer Advanced
APM standard at 42 CFR 414.1420(d)(3)(i)
(``2018-24170.txt:48825-48827``, 83 FR 59939), which CMS designed to
*align with* the Medicare-option standard but which is not itself a
statement of the Medicare-option figure. Rather than reuse that
number under a different provision's field, ``benchmark_nominal_pct``
is left ``None`` on every entry, with the gap documented in
``RiskStandards.notes``.
"""
from __future__ import annotations
from pydantic import BaseModel
class QpThresholds(BaseModel):
"""A pair of QP (or Partial QP) determination thresholds.
An eligible clinician (or APM Entity) attains status by meeting
*either* threshold — they are not additive requirements."""
payment_amount_pct: float
"""Minimum % of Medicare Part B payments for covered professional
services that must flow through Advanced APMs."""
patient_count_pct: float
"""Minimum % of Medicare patients that must be attributed through
Advanced APMs."""
class RiskStandards(BaseModel):
"""The "more than nominal" financial-risk standard an Advanced APM
must impose on its APM Entities, per 42 CFR 414.1415(c)(3)(i)."""
revenue_nominal_pct: float
"""Revenue-based nominal amount standard — % of the average
estimated total Medicare Parts A and B revenue of all providers
and suppliers in participating APM Entities that must be at risk.
42 CFR 414.1415(c)(3)(i)(A)."""
benchmark_nominal_pct: float | None = None
"""Expenditure/benchmark-based nominal amount standard — minimum %
of expected expenditures the APM Entity must be liable for.
42 CFR 414.1415(c)(3)(i)(B). ``None`` when this repository's FR
corpus does not state the figure for this specific provision — see
module docstring "Nominal amount standard sourcing caveat" and
``notes``; do **not** assume it equals the numerically similar but
textually distinct Other Payer Advanced APM standard at 42 CFR
414.1420(d)(3)(i)."""
notes: str = ""
"""Sourcing caveats — see module docstring "Nominal amount
standard sourcing caveat" for why ``revenue_nominal_pct`` is not
directly restated as a bare number in the CY2026 NPRM/Final Rule,
and why ``benchmark_nominal_pct`` is ``None``."""
class QppProposed(BaseModel):
"""QPP parameters as *proposed* in a year's PFS NPRM (pre-final).
Mirrors :class:`pfs.rules.ProposedRule` — captures the NPRM's own
stated QPP changes so they can be compared against the eventual
Final Rule disposition. Never itself used for QP/Partial QP
determinations; ``changes`` is the authoritative sourced summary
of what was proposed *and* finalized."""
cms_rule_id: str
"""CMS internal rule identifier, e.g. ``"CMS-1832-P"``."""
federal_register_citation: str
"""Federal Register citation of the NPRM, e.g. ``"90 FR 32352"``."""
changes: str
"""Sourced prose summary of the QPP-relevant proposals in this
NPRM and their Final Rule disposition (finalized as proposed,
finalized with modification, not finalized, or "proposed no
change to X"), with FR page citations for each claim."""
qp_thresholds: QpThresholds | None = None
"""Proposed QP thresholds, only if the NPRM proposed a numeric
change from the current-law values on the enclosing ``QppYear``."""
partial_qp_thresholds: QpThresholds | None = None
"""Proposed Partial QP thresholds, only if the NPRM proposed a
numeric change."""
risk_standards: RiskStandards | None = None
"""Proposed nominal amount standards, only if the NPRM proposed a
numeric change."""
class QppYear(BaseModel):
"""QP / Advanced-APM parameters for a single QP Performance Period.
Keyed in :data:`QPP` by *performance year*; use
:func:`for_payment_year` to look up by the payment year that
performance period's determinations affect (``performance_year +
2``)."""
performance_year: int
"""The QP Performance Period (calendar year in which Advanced-APM
participation is measured)."""
payment_year: int
"""The payment year affected by this performance period's QP
determinations — always ``performance_year + 2``."""
qp_thresholds: QpThresholds
"""Current-law QP determination thresholds for this performance
period (Medicare Option, generally applicable — section
1833(z)(2) of the Act)."""
partial_qp_thresholds: QpThresholds
"""Current-law Partial QP determination thresholds for this
performance period."""
risk_standards: RiskStandards
"""Current-law generally applicable nominal amount standard for
this performance period."""
apm_incentive_pct: float | None
"""Lump-sum APM Incentive Payment, as a % of the QP's base-year
(payment_year - 1) paid claims for covered professional services —
``None`` once the statutory sunset takes effect (payment years
2027+, i.e. performance years 2025+)."""
qp_cf_applies: bool
"""``True`` once the payment year for this performance period uses
the differential QP vs. non-QP conversion factor (payment year
2026 onward, i.e. performance year 2024 onward)."""
cehrt_required: bool = True
"""Whether an Advanced APM must require its participants to use
Certified EHR Technology (CEHRT) — 42 CFR 414.1415(a)."""
citation: str = ""
"""Federal Register citation this entry's current-law values were
transcribed from."""
proposed: QppProposed | None = None
"""NPRM (proposed-rule) QPP changes for this performance period,
when captured. Informational only — never used in place of the
fields above."""
# ── Annual QPP registry ──────────────────────────────────────────
#
# QP / Partial QP thresholds: the statutory schedule (section
# 1833(z)(2) of the Act) raised the Medicare-option thresholds to 75%
# (payment amount) / 50% (patient count) effective QP Performance
# Period 2023, with Partial QP thresholds set at the prior period's
# QP levels — 50% / 35%. Transcribed from data/fr_downloads/
# 2025-13271.txt (NPRM) and cross-checked against data/fr_downloads/
# 2025-19787.txt (Final Rule):
#
# - NPRM 90 FR 32772 (line 36531-36537): "...the QP thresholds have
# increased relative to previous years and, effective with the
# 2025 QP Performance Period are now at 75 percent for the
# payment amount and 50 percent for the patient count."
# - NPRM 90 FR 32819 (line 40647-40656, Regulatory Impact Analysis):
# "the thresholds to achieve QP status beginning in the 2026 QP
# Performance Period ... will increase from 50 percent to 75
# percent for the payment amount, and from 35 percent to 50
# percent for the patient count." This RIA sentence is internally
# inconsistent with the 90 FR 32772 recital above (both appear in
# the same NPRM) — it reads as stale boilerplate describing the
# pre-2023 -> 2023 statutory step-up, not a change CMS-1832-P
# itself proposes.
# - Final Rule 90 FR 49980 (line 69796-69798; corrected from a
# mistranscribed "90 FR 49928" — that page marker is at line 64990,
# these lines fall between the [[Page 49980]] marker at line 69792
# and the [[Page 49981]] marker at line 69913) drops the "increase
# from" framing entirely: "The thresholds to achieve QP status in
# the 2026 QP Performance Period (2028 payment year) are set to
# 75 percent for the payment amount, and 50 percent for the
# patient count" — consistent with 75/50 being the unchanged,
# already-current value, not a new increase.
# - Final Rule 90 FR 49928 (line 65021-65026): "...if the proposed
# policy would result in an ACO's payment amount score increasing
# from 48 percent to 51 percent, that would cross the 50 percent
# Partial QP threshold" — confirms Partial QP payment-amount
# threshold = 50%. The Partial QP patient-count threshold (35%) is
# not independently restated as a bare number in either document;
# it is inferred from the same NPRM RIA sentence's "35 percent"
# figure (the pre-2023 QP patient-count digit, which by the
# statute's step-down design becomes the post-2023 Partial QP
# digit) — see module docstring caveat.
#
# Risk standards: see module docstring "Nominal amount standard
# sourcing caveat" — 8% revenue-based (42 CFR 414.1415(c)(3)(i)(A)),
# unchanged across 2023-2026 (no proposed or finalized change found in
# either CY2026 document). Benchmark-based standard (42 CFR
# 414.1415(c)(3)(i)(B)) left None — not stated as a bare number
# anywhere in this repository's FR corpus.
#
# APM incentive %% and qp_cf_applies: transcribed from NPRM 90 FR
# 32818 / Final Rule 90 FR 49979-49980 ("b. APM Incentive Payments to
# QPs in Advanced APMs and Other Payer Advanced APMs"), and the
# sunset statement at NPRM 90 FR 32696 / Final Rule 90 FR 49838
# ("Under current law, payment year 2026 is the last year for these
# payments.").
_RISK_NOTES = (
"Revenue-based 8% per CY2019 PFS Final Rule (83 FR 59923, "
"data/fr_downloads/2018-24170.txt:47248-47252) 'to maintain the "
"generally applicable revenue-based nominal amount standard at 8 "
"percent ... for QP Performance Periods 2021 through 2024' (Sec. "
"414.1415(c)(3)(i)(A)); not extended or amended in either CY2026 "
"document (no proposed/final change found) — carried forward. "
"(This document separately restates 8% for the *different* Other "
"Payer Advanced APM standard, Sec. 414.1420(d)(3)(i), at line "
"48189-48192 — do not conflate the two.) "
"Benchmark-based standard (Sec. 414.1415(c)(3)(i)(B)) is left "
"None: not stated as a bare percentage anywhere in this "
"repository's FR corpus (2025-13271.txt, 2025-19787.txt, "
"2018-24170.txt, 2019-16041.txt all searched). The only nearby "
"quoted figure, 'at least 3 percent of the expected expenditures' "
"(2018-24170.txt:48825-48827, 83 FR 59939), is for the textually "
"distinct Other Payer Advanced APM standard at Sec. "
"414.1420(d)(3)(i), not this provision."
)
def _risk_standards() -> RiskStandards:
return RiskStandards(
revenue_nominal_pct=8.0,
benchmark_nominal_pct=None,
notes=_RISK_NOTES,
)
def _qp_thresholds() -> QpThresholds:
return QpThresholds(payment_amount_pct=75.0, patient_count_pct=50.0)
def _partial_qp_thresholds() -> QpThresholds:
return QpThresholds(payment_amount_pct=50.0, patient_count_pct=35.0)
QPP: dict[int, QppYear] = {
2023: QppYear(
performance_year=2023,
payment_year=2025,
qp_thresholds=_qp_thresholds(),
partial_qp_thresholds=_partial_qp_thresholds(),
risk_standards=_risk_standards(),
apm_incentive_pct=3.5,
qp_cf_applies=False,
citation="90 FR 49979-49980",
),
2024: QppYear(
# Payment year 2026 is the first year with a differential
# QP/non-QP conversion factor (section 1848(d)(20) of the
# Act) AND still receives the (final year of) lump-sum APM
# Incentive Payment — see NPRM 90 FR 32818, Final Rule 90 FR
# 49979-49980.
performance_year=2024,
payment_year=2026,
qp_thresholds=_qp_thresholds(),
partial_qp_thresholds=_partial_qp_thresholds(),
risk_standards=_risk_standards(),
apm_incentive_pct=1.88,
qp_cf_applies=True,
citation="90 FR 49979-49980",
),
2025: QppYear(
# Under current law, payment year 2026 (performance year
# 2024) was the last year with a lump-sum APM Incentive
# Payment — NPRM 90 FR 32696, Final Rule 90 FR 49838.
performance_year=2025,
payment_year=2027,
qp_thresholds=_qp_thresholds(),
partial_qp_thresholds=_partial_qp_thresholds(),
risk_standards=_risk_standards(),
apm_incentive_pct=None,
qp_cf_applies=True,
citation="90 FR 49838",
),
2026: QppYear(
performance_year=2026,
payment_year=2028,
qp_thresholds=_qp_thresholds(),
partial_qp_thresholds=_partial_qp_thresholds(),
risk_standards=_risk_standards(),
apm_incentive_pct=None,
qp_cf_applies=True,
# Corrected from "90 FR 49928" alone: the QP threshold statement
# itself is at 90 FR 49980 (see docstring pincite above); 49928
# is retained alongside it since it's independently the source
# for the Partial QP payment-amount confirmation (docstring
# pincite, line 65021-65026).
citation="90 FR 49928, 49980",
# NPRM proposals per :pincite:`2KVJ2HKX` — CMS-1832-P, 90 FR
# 32352, transcribed from data/fr_downloads/2025-13271.txt;
# disposition from data/fr_downloads/2025-19787.txt.
proposed=QppProposed(
cms_rule_id="CMS-1832-P",
federal_register_citation="90 FR 32352",
changes=(
"Individual-level QP determination: proposed a new "
"Threshold Score calculation at the individual "
"eligible-clinician level (Sec. 414.1425(b)(3)) for "
"all Advanced APM participants beginning with the "
"2026 QP Performance Period, alongside the existing "
"APM Entity-level calculation (NPRM 90 FR 32771). "
"Finalized as proposed (Final Rule 90 FR 49923-49928, "
"49980). "
"Attribution-eligible beneficiary definition: "
"proposed to re-expand the sixth criterion at Sec. "
"414.1305 to include any beneficiary with a claim for "
"any covered professional service (not just E/M "
"services), beginning with the 2026 QP Performance "
"Period (NPRM 90 FR 32773) — a re-proposal of a CY2025 "
"proposal CMS did not finalize. Finalized WITH "
"MODIFICATION: CMS adopted a dual methodology that "
"continues to use E/M services alongside a covered- "
"professional-services methodology, rather than "
"replacing E/M outright (Final Rule 90 FR 49980). "
"Medical Home Model 50-eligible-clinician limit: "
"proposed to sunset Sec. 414.1415(c)(7) (and the "
"parallel Sec. 414.1420(d)(8) for Aligned Other Payer/"
"Medicaid Medical Home Models) so the 50-clinician cap "
"applies only through the 2025 QP Performance Period, "
"beginning with the 2026 QP Performance Period (NPRM "
"90 FR 32773). Finalized as proposed (Final Rule 90 FR "
"49929: 'finalizing this policy as proposed'). "
"QP/Partial QP thresholds: proposed no numeric change "
"— thresholds remain 75%/50% (QP) and 50%/35% "
"(Partial QP); see QPP[2026].qp_thresholds and the "
"module docstring re: the NPRM's internally "
"inconsistent RIA framing, corrected in the Final "
"Rule (NPRM 90 FR 32772 vs 90 FR 32819; Final Rule 90 "
"FR 49928). "
"Nominal amount standards (42 CFR "
"414.1415(c)(3)(i)(A)/(B)) and the CEHRT requirement "
"(Sec. 414.1415(a)(i)): proposed no change — neither "
"document restates or amends these provisions beyond "
"cross-referencing the section numbers (NPRM/Final "
"26819-26821 and 50693-50696 respectively)."
),
),
),
}
def for_payment_year(year: int) -> QppYear:
"""Return the :class:`QppYear` whose ``payment_year`` matches.
Raises ``KeyError`` if no performance period in :data:`QPP` maps
to this payment year."""
try:
return next(q for q in QPP.values() if q.payment_year == year)
except StopIteration:
raise KeyError(year) from None

View File

@@ -141,12 +141,18 @@ CLASSIFY_TOOL = LLMTool(
},
)
# Docket ↔ CMS rule identity for the dockets this classifier targets.
# Verified against the regulations.gov docket abstract (2026-08-12):
# CMS-2025-0304 is the CY2026 *PFS* NPRM, not the OPPS rule — skin-substitute
# payment moved into the PFS rule in CY2026.
DOCKET_RULES: dict[str, str] = {"CMS-2025-0304": "CMS-1832-P"}
_SYSTEM = """\
You classify public comments submitted on CMS's CY2026 OPPS proposed rule
(CMS-1834-P, docket CMS-2025-0304), specifically regarding the proposal to
You classify public comments submitted on CMS's CY2026 PFS proposed rule
(CMS-1832-P, docket CMS-2025-0304), specifically regarding the proposal to
reclassify skin substitutes (cellular and tissue-based products, CTPs) from
drugs/biologicals paid at ASP+6% to incident-to supplies paid a flat packaged
rate (~$127.28/cm²), replacing Q-codes with C5271–C5278.
rate, replacing Q-codes with C5271–C5278.
Position semantics:
- strongly_oppose: wants ASP+6% preserved; rejects reclassification outright

View File

@@ -71,6 +71,35 @@ class TestIndexCorpus:
assert "indexed=3 skipped=1 chunks=7" in result.output
class TestIndexRules:
@patch("llm.source.iter_rule_docs")
@patch("llm.pool.HostPool.from_config")
@patch("llm.index.index_docs")
@patch("conf.connect.bib")
@patch("llm.config.load")
def test_rules_collection(
self, mock_load, mock_bib, mock_index_docs, mock_from_config, mock_iter
):
cfg = MagicMock()
mock_load.return_value = cfg
store = MagicMock()
mock_bib.return_value = store
mock_iter.return_value = iter(["doc1"])
mock_from_config.return_value = MagicMock()
mock_index_docs.return_value = _STATS
result = runner.invoke(
app,
["index", "--collection", "rules", "--key", "abc123", "--key", "def456"],
)
assert result.exit_code == 0
mock_iter.assert_called_once_with(store, keys=("abc123", "def456"))
kwargs = mock_index_docs.call_args.kwargs
assert kwargs["collection"] == "rules"
assert "indexed=3 skipped=1 chunks=7" in result.output
class TestIndexBadCollection:
@patch("conf.connect.bib")
@patch("llm.config.load")
@@ -81,7 +110,7 @@ class TestIndexBadCollection:
result = runner.invoke(app, ["index", "--collection", "bogus"])
assert result.exit_code == 2
assert "collection must be 'comments' or 'corpus'" in result.output
assert "collection must be 'comments', 'corpus' or 'rules'" in result.output
class TestIndexLimit:

View File

@@ -0,0 +1,34 @@
"""Tests for cms.ingest_log — provenance table writer."""
from __future__ import annotations
import duckdb
from cms import ingest_log
def test_log_ingest_appends_row(tmp_path):
src = tmp_path / "f.csv"
src.write_text("a,b\n1,2\n")
con = duckdb.connect()
ingest_log.log_ingest(
con,
module="pfs",
table_name="pfs.rvu_proposed",
rows=2,
source_file=str(src),
rule_id="CMS-1832-P",
fr_citation="90 FR 1",
pincite_key="2KVJ2HKX",
run_id=ingest_log.new_run_id(),
)
row = con.execute(
"SELECT module, table_name, rows, rule_id, length(sha256) FROM cms.ingest_log"
).fetchone()
assert row == ("pfs", "pfs.rvu_proposed", 2, "CMS-1832-P", 64)
def test_missing_source_file_logs_empty_hash():
con = duckdb.connect()
ingest_log.log_ingest(con, module="pfs", table_name="t", rows=0)
assert con.execute("SELECT sha256 FROM cms.ingest_log").fetchone()[0] == ""

View File

@@ -1,14 +1,17 @@
"""llm.source — comment + corpus Doc iterators."""
from unittest.mock import patch
import pytest
from bib.item import Item
from bib.item import Item, Rule
from bib.store import Store
from llm.source import (
_default_root,
comment_key_map,
iter_comment_docs,
iter_corpus_docs,
iter_rule_docs,
)
DOCKET = "CMS-2019-0111"
@@ -104,6 +107,101 @@ class TestCorpusDocs:
assert key not in {d.key for d in iter_corpus_docs(store)}
class TestRuleDocs:
@pytest.fixture
def rule_key(self, store):
key = store.create(
Rule(
title="CY2026 PFS Proposed Rule",
document_number="2025-13271",
)
)
for tag in ("cms-rule:CMS-1832-P", "year:2026"):
store.add_tag(key, tag)
return key
def test_txt_attachment_yields_doc_with_metadata(self, store, rule_key, tmp_path):
txt = tmp_path / "2025-13271.txt"
txt.write_text(
"<html><head><title>x</title></head><body><pre>\n"
"The Secretary proposes to amend 42 CFR part 414.\n"
"</pre></body></html>"
)
store.attach_file(rule_key, txt)
docs = list(iter_rule_docs(store))
assert len(docs) == 1
doc = docs[0]
assert doc.key == rule_key
assert "The Secretary proposes to amend 42 CFR part 414." in doc.text
assert "<html>" not in doc.text
assert "<pre>" not in doc.text
assert doc.metadata == {
"doctype": "rule",
"cms_rule_id": "CMS-1832-P",
"fr_document_number": "2025-13271",
"year": "2026",
"item_key": rule_key,
}
def test_inline_html_and_entities_stripped(self, store, rule_key, tmp_path):
txt = tmp_path / "2025-13271.txt"
txt.write_text(
"<html><head><title>x</title></head><body><pre>\n"
"[[Page 12345]]\n"
'Contact us at <a href="/cdn-cgi/l/email-protection#x">'
"someone</a> regarding CMS &amp; PFS.\n"
"A finding was significant (p<0.05 and >2 cm).\n"
"</pre></body></html>"
)
store.attach_file(rule_key, txt)
docs = list(iter_rule_docs(store))
assert len(docs) == 1
text = docs[0].text
assert "<a href=" not in text
assert "</a>" not in text
assert "someone" in text
assert "CMS & PFS" in text
assert "[[Page 12345]]" in text
assert "p<0.05 and >2 cm" in text
def test_pdf_only_falls_back_to_extract_attachment(self, store, rule_key, tmp_path):
pdf = tmp_path / "rule.pdf"
pdf.write_bytes(b"%PDF-1.4 fake")
store.attach_file(rule_key, pdf)
with patch("rex.comments.combine.extract_attachment") as mock_extract:
from rex.comments.extract import ExtractResult
mock_extract.return_value = ExtractResult(
text="Extracted PDF body.", status="ok", chars=20
)
docs = list(iter_rule_docs(store))
assert len(docs) == 1
assert docs[0].text == "Extracted PDF body."
def test_keys_filters_to_named_items(self, store, rule_key, tmp_path):
other_key = store.create(Rule(title="Other rule", document_number="2025-00001"))
store.add_tag(other_key, "cms-rule:CMS-9999-P")
for key in (rule_key, other_key):
txt = tmp_path / f"{key}.txt"
txt.write_text("<pre>Some rule text.</pre>")
store.attach_file(key, txt)
docs = list(iter_rule_docs(store, keys=(rule_key,)))
assert [d.key for d in docs] == [rule_key]
def test_non_rule_items_not_yielded(self, store):
assert all(d.metadata["doctype"] == "rule" for d in iter_rule_docs(store))
# the "report" comment item from the `store` fixture is never yielded
assert store._comment_key not in {d.key for d in iter_rule_docs(store)}
class TestDefaultRoot:
def test_default_root_under_state_comments(self):
from conf import ROOT

92
tests/pfs/test_nprm.py Normal file
View File

@@ -0,0 +1,92 @@
"""Tests for pfs.nprm — NPRM Addendum B loader → pfs.rvu_proposed (#592)."""
from __future__ import annotations
import duckdb
from pfs import nprm
def _fixture(tmp_path):
p = tmp_path / "CY2026_NPRM_Addendum_B.csv"
p.write_text(
"HCPCS,MOD,DESCRIPTION,STATUS CODE,WORK RVU,"
"NON-FAC PE RVU,FAC PE RVU,MP RVU\n"
"99213,,Office visit est,A,1.3,1.5,0.55,0.1\n"
"0001A,,Admin covid,X,0.0,0.0,0.0,0.0\n"
)
return p
def test_load_rvu_proposed_loads_and_reloads(tmp_path, monkeypatch):
path = _fixture(tmp_path)
monkeypatch.setattr(nprm, "_discover_addendum_b", lambda: path)
con = duckdb.connect()
out = nprm.load_rvu_proposed(con)
assert out["rows"] == 2
row = con.execute(
"SELECT hcpcs, work_rvu, cms_rule_id FROM pfs.rvu_proposed WHERE hcpcs='99213'"
).fetchone()
assert row == ("99213", 1.3, "CMS-1832-P")
nprm.load_rvu_proposed(con) # idempotent delete-and-reload
assert con.execute("SELECT count(*) FROM pfs.rvu_proposed").fetchone()[0] == 2
def _dirty_fixture(tmp_path):
"""Real-file quirks: padded cells, "NA" markers, a footnote row.
Mirrors what the actual CY2026 Addendum B workbook contains — this
combination broke silently on the real file (see task-5-report.md)
and was fixed via manual smoke-testing rather than a fixture test,
so these rows lock the fix in.
"""
p = tmp_path / "CY2026_NPRM_Addendum_B_dirty.csv"
p.write_text(
"HCPCS,MOD,DESCRIPTION,STATUS CODE,WORK RVU,"
"NON-FAC PE RVU,FAC PE RVU,MP RVU\n"
" 99213 , ,Office visit est,A, 1.30 , 1.50 , 0.55 , 0.10 \n"
"99214,,Office visit NA test,A,NA,NA,NA,NA\n"
"1 CPT codes and descriptors only are copyright 2025 American "
"Medical Association. All Rights Reserved.,,,,,,,\n"
)
return p
def test_load_rvu_proposed_strips_padding(tmp_path, monkeypatch):
"""Whitespace-padded HCPCS/numeric cells load clean, not null."""
path = _dirty_fixture(tmp_path)
monkeypatch.setattr(nprm, "_discover_addendum_b", lambda: path)
con = duckdb.connect()
nprm.load_rvu_proposed(con)
row = con.execute(
"SELECT hcpcs, description, work_rvu, nonfac_pe_rvu, fac_pe_rvu, mp_rvu "
"FROM pfs.rvu_proposed WHERE hcpcs='99213'"
).fetchone()
assert row == ("99213", "Office visit est", 1.3, 1.5, 0.55, 0.1)
def test_load_rvu_proposed_na_marker_becomes_null(tmp_path, monkeypatch):
""" "NA" in a numeric cell loads as SQL NULL, not a cast error."""
path = _dirty_fixture(tmp_path)
monkeypatch.setattr(nprm, "_discover_addendum_b", lambda: path)
con = duckdb.connect()
nprm.load_rvu_proposed(con)
row = con.execute(
"SELECT work_rvu, nonfac_pe_rvu, fac_pe_rvu, mp_rvu "
"FROM pfs.rvu_proposed WHERE hcpcs='99214'"
).fetchone()
assert row == (None, None, None, None)
def test_load_rvu_proposed_drops_footnote_rows(tmp_path, monkeypatch):
"""A footnote row (first cell = long sentence) is not a HCPCS code."""
path = _dirty_fixture(tmp_path)
monkeypatch.setattr(nprm, "_discover_addendum_b", lambda: path)
con = duckdb.connect()
out = nprm.load_rvu_proposed(con)
assert out["rows"] == 2 # only 99213 and 99214 — footnote row excluded
assert con.execute("SELECT count(*) FROM pfs.rvu_proposed").fetchone()[0] == 2
footnote = con.execute(
"SELECT count(*) FROM pfs.rvu_proposed WHERE hcpcs LIKE '1 CPT%'"
).fetchone()[0]
assert footnote == 0

View File

@@ -489,7 +489,22 @@ class TestLoadZipCarrierEdges:
p.write_text(line)
f = _f("ZIP5_2024.txt", 2024, ".txt", path=str(p))
# Patch pl.DataFrame to drop year_quarter before the if-check
# Patch pl.DataFrame to drop year_quarter before the if-check.
#
# IMPORTANT: patch the module *binding* pfs.pipe.pl, not the
# attribute pfs.pipe.pl.DataFrame. `pl` inside pfs.pipe is the
# real `polars` module object, so `patch("pfs.pipe.pl.DataFrame")`
# would replace `polars.DataFrame` globally (process-wide) for
# the duration of the `with` block. If duckdb resolves its
# Python replacement-scan type for polars DataFrames for the
# first time while that global is a MagicMock, it caches the
# MagicMock as "the polars DataFrame type" for the rest of the
# process, and every later `SELECT * FROM df` scan anywhere in
# the suite fails with
# "TypeError: isinstance() arg 2 must be a type, a tuple of
# types, or a union". Using a standalone proxy module for the
# `pl` name (with the real polars attributes copied in) keeps
# the real `polars.DataFrame` class untouched.
_orig_df = pl.DataFrame
def _df_no_yq(rows):
@@ -498,7 +513,11 @@ class TestLoadZipCarrierEdges:
df = df.drop("year_quarter")
return df
with patch("pfs.pipe.pl.DataFrame", side_effect=_df_no_yq):
fake_pl = types.ModuleType("fake_polars_proxy")
fake_pl.__dict__.update(pl.__dict__)
fake_pl.DataFrame = _df_no_yq
with patch("pfs.pipe.pl", fake_pl):
result = _load_zip_carrier_files([f], con)
assert result["rows"] >= 1

View File

@@ -11,7 +11,7 @@ from __future__ import annotations
import pytest
from pfs.rules import RULES, RuleYear, cy2024, cy2025, cy2026
from pfs.rules import RULES, ProposedRule, RuleYear, cy2024, cy2025, cy2026
# ── RuleYear model ───────────────────────────────────────────────
@@ -149,7 +149,7 @@ class TestSpecificValues:
assert cy2026.telehealth_originating_site_fee == 30.38
def test_cy2026_federal_register(self):
assert cy2026.federal_register_citation == "90 FR 101174"
assert cy2026.federal_register_citation == "90 FR 49266"
def test_cy2026_clinical_labor_update(self):
assert cy2026.clinical_labor_rate_update is True
@@ -232,3 +232,67 @@ class TestCfForDate:
)
with pytest.raises(ValueError, match="outside every CF segment"):
ry.cf_for_date(date(2024, 1, 15))
# ── ProposedRule — CY2026 NPRM parameters ────────────────────────
class TestProposedRule:
"""ProposedRule model and RULES[2026].proposed values."""
def test_cy2026_has_proposed_rule(self):
p = RULES[2026].proposed
assert p is not None
assert p.cms_rule_id == "CMS-1832-P"
assert p.fr_document_number == "2025-13271"
assert p.published.year == 2025
assert p.comment_close > p.published
# exact transcribed values — from data/fr_downloads/2025-13271.txt
assert p.conversion_factor == 33.4209
assert p.cf_qp == 33.5875
assert p.conversion_factor != RULES[2026].conversion_factor # proposed ≠ final
def test_cy2026_proposed_anesthesia_cfs(self):
p = RULES[2026].proposed
assert p.anesthesia_cf == 20.5728
assert p.anesthesia_cf_qp == 20.6754
def test_cy2026_proposed_budget_neutrality_adjustor(self):
assert RULES[2026].proposed.budget_neutrality_adjustor == 1.0055
def test_cy2026_proposed_telehealth_fee(self):
assert RULES[2026].proposed.telehealth_originating_site_fee == 31.85
def test_cy2026_proposed_federal_register_citation(self):
assert RULES[2026].proposed.federal_register_citation == "90 FR 32352"
def test_cy2026_proposed_published_date(self):
from datetime import date
assert RULES[2026].proposed.published == date(2025, 7, 16)
def test_cy2026_proposed_comment_close_date(self):
from datetime import date
assert RULES[2026].proposed.comment_close == date(2025, 9, 12)
def test_pre_2026_years_have_no_proposed_block(self):
assert RULES[2025].proposed is None
def test_proposed_rule_default_notes(self):
from datetime import date
p = ProposedRule(
cms_rule_id="CMS-0000-P",
fr_document_number="2099-00000",
federal_register_citation="99 FR 1",
published=date(2099, 1, 1),
comment_close=date(2099, 3, 1),
conversion_factor=1.0,
)
assert p.notes == ""
assert p.cf_qp is None
assert p.anesthesia_cf is None
assert p.anesthesia_cf_qp is None
assert p.budget_neutrality_adjustor == 1.0
assert p.telehealth_originating_site_fee is None

0
tests/qpp/__init__.py Normal file
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240
tests/qpp/test_rules.py Normal file
View File

@@ -0,0 +1,240 @@
"""Tests for qpp — QP / Advanced-APM registry.
Covers src/qpp/__init__.py:
- QpThresholds / RiskStandards / QppProposed model construction
- QppYear model construction with required and default fields
- QPP dict: performance years 2023-2026, payment_year = performance_year + 2
- qp_cf_applies: False before performance year 2024, True from 2024 onward
- Every entry has a non-empty citation
- QPP[2026].proposed is CMS-1832-P
- for_payment_year(year) lookup, including KeyError on miss
- Exact-value asserts for transcribed thresholds (see task-6-report.md)
"""
from __future__ import annotations
import pytest
from qpp import QPP, QppProposed, QppYear, QpThresholds, RiskStandards, for_payment_year
# ── QpThresholds model ───────────────────────────────────────────
class TestQpThresholds:
def test_construction(self):
t = QpThresholds(payment_amount_pct=75.0, patient_count_pct=50.0)
assert t.payment_amount_pct == 75.0
assert t.patient_count_pct == 50.0
# ── RiskStandards model ──────────────────────────────────────────
class TestRiskStandards:
def test_construction(self):
r = RiskStandards(revenue_nominal_pct=8.0, benchmark_nominal_pct=3.0)
assert r.revenue_nominal_pct == 8.0
assert r.benchmark_nominal_pct == 3.0
def test_default_notes(self):
r = RiskStandards(revenue_nominal_pct=8.0, benchmark_nominal_pct=3.0)
assert r.notes == ""
def test_default_benchmark_nominal_pct(self):
r = RiskStandards(revenue_nominal_pct=8.0)
assert r.benchmark_nominal_pct is None
# ── QppProposed model ────────────────────────────────────────────
class TestQppProposed:
def test_required_fields(self):
p = QppProposed(
cms_rule_id="CMS-0000-P",
federal_register_citation="99 FR 1",
changes="proposed no change to anything",
)
assert p.cms_rule_id == "CMS-0000-P"
assert p.changes == "proposed no change to anything"
def test_default_optional_blocks(self):
p = QppProposed(
cms_rule_id="CMS-0000-P",
federal_register_citation="99 FR 1",
changes="no change",
)
assert p.qp_thresholds is None
assert p.partial_qp_thresholds is None
assert p.risk_standards is None
# ── QppYear model ─────────────────────────────────────────────────
class TestQppYear:
def _minimal_kwargs(self):
return dict(
performance_year=2099,
payment_year=2101,
qp_thresholds=QpThresholds(payment_amount_pct=75.0, patient_count_pct=50.0),
partial_qp_thresholds=QpThresholds(
payment_amount_pct=50.0, patient_count_pct=35.0
),
risk_standards=RiskStandards(
revenue_nominal_pct=8.0, benchmark_nominal_pct=3.0
),
apm_incentive_pct=None,
qp_cf_applies=True,
)
def test_required_fields(self):
y = QppYear(**self._minimal_kwargs())
assert y.performance_year == 2099
assert y.payment_year == 2101
def test_default_cehrt_required(self):
y = QppYear(**self._minimal_kwargs())
assert y.cehrt_required is True
def test_default_citation(self):
y = QppYear(**self._minimal_kwargs())
assert y.citation == ""
def test_default_proposed(self):
y = QppYear(**self._minimal_kwargs())
assert y.proposed is None
# ── QPP dict structure ───────────────────────────────────────────
class TestQppDict:
EXPECTED_YEARS = [2023, 2024, 2025, 2026]
def test_count(self):
assert len(QPP) == 4
def test_keys(self):
assert sorted(QPP.keys()) == self.EXPECTED_YEARS
@pytest.mark.parametrize("year", EXPECTED_YEARS)
def test_values_are_qppyear(self, year):
assert isinstance(QPP[year], QppYear)
@pytest.mark.parametrize("year", EXPECTED_YEARS)
def test_performance_year_field_matches_key(self, year):
assert QPP[year].performance_year == year
@pytest.mark.parametrize("year", EXPECTED_YEARS)
def test_payment_year_is_performance_year_plus_2(self, year):
assert QPP[year].payment_year == year + 2
@pytest.mark.parametrize("year", EXPECTED_YEARS)
def test_citation_non_empty(self, year):
assert QPP[year].citation != ""
class TestQpCfApplies:
"""payment year 2026 (performance year 2024) is the first split-CF year."""
def test_2023_false(self):
assert QPP[2023].qp_cf_applies is False
def test_2024_true(self):
assert QPP[2024].qp_cf_applies is True
def test_2025_true(self):
assert QPP[2025].qp_cf_applies is True
def test_2026_true(self):
assert QPP[2026].qp_cf_applies is True
class TestApmIncentivePct:
"""Lump-sum APM Incentive Payment sunsets after payment year 2026."""
def test_2023_incentive(self):
assert QPP[2023].apm_incentive_pct == 3.5
def test_2024_incentive(self):
assert QPP[2024].apm_incentive_pct == 1.88
def test_2025_no_incentive(self):
assert QPP[2025].apm_incentive_pct is None
def test_2026_no_incentive(self):
assert QPP[2026].apm_incentive_pct is None
# ── QPP[2026].proposed — CMS-1832-P ──────────────────────────────
class TestProposed:
def test_2026_has_proposed(self):
p = QPP[2026].proposed
assert p is not None
assert p.cms_rule_id == "CMS-1832-P"
assert p.federal_register_citation == "90 FR 32352"
def test_2026_changes_non_empty(self):
assert len(QPP[2026].proposed.changes) > 0
def test_earlier_years_have_no_proposed_block(self):
assert QPP[2023].proposed is None
assert QPP[2024].proposed is None
assert QPP[2025].proposed is None
# ── Exact transcribed threshold values ───────────────────────────
class TestSpecificValues:
"""Verify transcribed QP/Partial QP thresholds and risk standards.
See task-6-report.md transcription table for sourcing per value."""
@pytest.mark.parametrize("year", [2023, 2024, 2025, 2026])
def test_qp_thresholds(self, year):
assert QPP[year].qp_thresholds.payment_amount_pct == 75.0
assert QPP[year].qp_thresholds.patient_count_pct == 50.0
@pytest.mark.parametrize("year", [2023, 2024, 2025, 2026])
def test_partial_qp_thresholds(self, year):
assert QPP[year].partial_qp_thresholds.payment_amount_pct == 50.0
assert QPP[year].partial_qp_thresholds.patient_count_pct == 35.0
@pytest.mark.parametrize("year", [2023, 2024, 2025, 2026])
def test_risk_standards(self, year):
# Revenue-based standard (42 CFR 414.1415(c)(3)(i)(A)) is
# transcribed (8%); the benchmark-based standard (42 CFR
# 414.1415(c)(3)(i)(B)) is not stated as a bare number in this
# repository's FR corpus and is left None — see
# RiskStandards.notes / module docstring.
assert QPP[year].risk_standards.revenue_nominal_pct == 8.0
assert QPP[year].risk_standards.benchmark_nominal_pct is None
@pytest.mark.parametrize("year", [2023, 2024, 2025, 2026])
def test_cehrt_required(self, year):
assert QPP[year].cehrt_required is True
# ── for_payment_year lookup ──────────────────────────────────────
class TestForPaymentYear:
def test_2025_maps_to_performance_2023(self):
assert for_payment_year(2025) is QPP[2023]
def test_2026_maps_to_performance_2024(self):
assert for_payment_year(2026) is QPP[2024]
def test_2027_maps_to_performance_2025(self):
assert for_payment_year(2027) is QPP[2025]
def test_2028_maps_to_performance_2026(self):
assert for_payment_year(2028) is QPP[2026]
def test_unknown_payment_year_raises_keyerror(self):
with pytest.raises(KeyError):
for_payment_year(1999)

View File

@@ -150,3 +150,17 @@ class TestClassify:
provider = _FakeProvider([])
with pytest.raises(ValueError, match="no classify_comment tool call"):
classify(provider, "text")
def test_docket_rules_maps_cy2026_pfs():
from rex.comments.classify import DOCKET_RULES
assert DOCKET_RULES["CMS-2025-0304"] == "CMS-1832-P"
def test_system_prompt_names_the_pfs_rule():
from rex.comments.classify import _SYSTEM
assert "CMS-1832-P" in _SYSTEM
assert "CMS-1834-P" not in _SYSTEM
assert "PFS proposed rule" in _SYSTEM

268
uv.lock generated
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{ name = "stack", extras = ["pfs"], marker = "extra == 'rec'" },
{ name = "stack", extras = ["qpp"], marker = "extra == 'all'" },
{ name = "stack", extras = ["rec"], marker = "extra == 'all'" },
{ name = "stack", extras = ["rex"], marker = "extra == 'all'" },
{ name = "stack", extras = ["rex"], marker = "extra == 'opps'" },
@@ -4236,7 +4244,7 @@ requires-dist = [
{ name = "uvicorn", marker = "extra == 'llm'", specifier = ">=0.41.0" },
{ name = "xlrd", specifier = ">=2.0.2" },
]
provides-extras = ["conf", "aco", "api", "bcda", "bib", "bls", "llm", "ccw", "cli", "mail", "cms", "opps", "pfs", "rec", "rex", "prisma", "perf", "sem", "lake", "aws", "gcp", "azure", "all"]
provides-extras = ["conf", "aco", "api", "bcda", "bib", "bls", "llm", "ccw", "cli", "mail", "cms", "opps", "pfs", "qpp", "rec", "rex", "prisma", "perf", "sem", "lake", "aws", "gcp", "azure", "all"]
[package.metadata.requires-dev]
dev = [