style: ruff-format two dev scripts; marimo stamps sample.py with 0.23.13

dev/scripts/add_ama_coding_to_zotero.py

@@ -92,8 +92,12 @@ def _folder_matches(folder: str, entries: list[dict]) -> dict | None:
 def _folder_entry(folder: str) -> dict:
     """A synthetic entry for a landed book no OpenLibrary title covers."""
     year = _year_of(folder)
-    return {"key": f"/local/{_norm(folder).replace(' ', '-')}", "title": folder,
+    return {
-            "year": int(year) if year else None, "isbns": []}
+        "key": f"/local/{_norm(folder).replace(' ', '-')}",
+        "title": folder,
+        "year": int(year) if year else None,
+        "isbns": [],
+    }
 
 
 def _index_books(books_dir: Path) -> dict[str, list[Path]]:
@@ -125,7 +129,9 @@ def _attach(db: Db, parent_id: int, src: Path, *, dry_run: bool) -> None:
         return
     subprocess.run(["sudo", "mkdir", "-p", str(storage_dir)], check=True)
     subprocess.run(["sudo", "cp", str(src), str(storage_dir / src.name)], check=True)
-    subprocess.run(["sudo", "chown", "-R", "100999:100999", str(storage_dir)], check=True)
+    subprocess.run(
+        ["sudo", "chown", "-R", "100999:100999", str(storage_dir)], check=True
+    )
     att_id = db.add_attachment(
         parent_id,
         key=att_key,
@@ -136,7 +142,9 @@ def _attach(db: Db, parent_id: int, src: Path, *, dry_run: bool) -> None:
     print(f"    attached {src.name} ({att_key})")
 
 
-def _ensure_item(db: Db, entry: dict, collection_key: str, *, dry_run: bool) -> int | None:
+def _ensure_item(
+    db: Db, entry: dict, collection_key: str, *, dry_run: bool
+) -> int | None:
     url = _ol_url(entry["key"])
     item_id = db.find_item_by_url(url)
     if item_id is not None:
@@ -223,8 +231,10 @@ def main() -> None:
             db.commit()
 
     print()
-    print(f"collection '{args.collection}' ({collection_key}): "
+    print(
-          f"{created} created, {existing} already present, {attached} files attached")
+        f"collection '{args.collection}' ({collection_key}): "
+        f"{created} created, {existing} already present, {attached} files attached"
+    )
     if not args.dry_run:
         print("Restart Zotero so the desktop reloads the database.")
 

dev/scripts/search_pubmed_palliative_rfi.py

@@ -399,7 +399,9 @@ def main() -> None:
         print(f"  {key} — {doc['title'][:60]}")
 
     # ── Forward snowball from anchor publications ─────────────────
-    print(f"\nSnowballing {len(SNOWBALL_SEEDS)} anchor publications (elink cited-by) ...")
+    print(
+        f"\nSnowballing {len(SNOWBALL_SEEDS)} anchor publications (elink cited-by) ..."
+    )
     cited_by = elink_cited_by(list(SNOWBALL_SEEDS))
     seen_pmids = set(merged)
     snowball_new: dict[str, list[str]] = {}

notebooks/sample.py

@@ -2,7 +2,7 @@
 
 import marimo
 
-__generated_with = "0.21.1"
+__generated_with = "0.23.13"
 app = marimo.App()